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ACAAAATGTTGTTCTACGAAGGACACGATCTCCCAGGATCAATGCTATGGCAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgtgtgtaaaacacttttgatcaatatgttctgaacattttgttgattcctatgtattagactttctgatcattatctcttaagtcctaacatctttcaatttcctttttcag
species | Vitis vinifera |
transcript | Vv06s0004g00240.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAAEST: gi|110725842|gb|EE102769.1|EE102769
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACACTTGGTCCAAAAEST: gi|351022807|gb|FQ428716.1|FQ428716
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACACTTGGTCCAAAAEST: gi|110699104|gb|EE077129.1|EE077129
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CTAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAAEST: gi|351024818|gb|FQ430643.1|FQ430643
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACACTTGGTCCAAAAEST: gi|349833403|gb|FQ420149.1|FQ420149
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACACTTGGTCCAAAAEST: gi|29782617|gb|CB348122.2|CB348122
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAAEST: gi|30256253|gb|CB972096.1|CB972096
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAAEST: gi|110689447|gb|EE065678.1|EE065678
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAAEST: gi|351040630|gb|FQ438174.1|FQ438174
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACACTTGGTCCAAAAEST: gi|351025708|gb|FQ426722.1|FQ426722
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
EST: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAG ACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACACTTGGTCCAAAA
genomic: CAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgt ... cctttttcagACTGGAGTAAATAAACTTGCTGATCTAGTGGGAGTTACTCTTGGTCCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAATGTTGTTCTACGAAGGACACGATCTCCCAGGATCAATGCTATGGCAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgtgtgtaaaacacttttgatcaatatgttctgaacattttgttgattcctatgtattagactttctgatcattatctcttaagtcctaacatctttcaatttcctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG