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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGTTATTGATGGTTTTGCTCGTGGTGTCTCGGGTTCCGTATAGGACGGCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttcattcttttaccttcacttcttcggatagctgcctaaaaaaaagctgaagatcgtttagggctttcctctttttttttaatttgtgcttcg...

Basic information

species Vitis vinifera
transcript Vv06s0004g00060.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688296|gb|EE066688.1|EE066688
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|110711311|gb|EE087659.1|EE087659
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|161706713|gb|FC055892.1|FC055892
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGAT
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGAT
EST: gi|110713034|gb|EE088602.1|EE088602
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|27586580|gb|CB009275.1|CB009275
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|110692596|gb|EE072018.1|EE072018
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|71859349|gb|DT008404.1|DT008404
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|71857308|gb|DT006363.1|DT006363
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|161716048|gb|FC069121.1|FC069121
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|294966527|gb|GW837662.1|GW837662
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|110693463|gb|EE069714.1|EE069714
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA
EST: gi|110688262|gb|EE066614.1|EE066614
EST:     GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAAATTGA                         AATGAAGGAAGCTGTTAATTATCAGACACTCTCTCCAAAGGATTTAGCCAA
genomic: GCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttc ... caaacaacagAATGAAGGAAGCTGTTAATTATCAGACACTCTATCCAAAGGATTTAGCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCGTTATTGATGGTTTTGCTCGTGGTGTCTCGGGTTCCGTATAGGACGGCCTTGCCATCCACTGTTCCGGCATTTCTGTGGTCCCATCACCAATTTGAgtatgctttcattcttttaccttcacttcttcggatagctgcctaaaaaaaagctgaagatcgtttagggctttcctctttttttttaatttgtgcttcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa