1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTCCTGCAGGAAGCACTCGAGATGAAGGGTGGGCAGCATTCAGGAACATCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgtgatccctcttccctgcttccctgtaaaagcattacttttcttcttttagtggggtctcattgcttcttgttttttgggtgtgaaaacag
species | Vitis vinifera |
transcript | Vv06s0004g00040.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|110726602|gb|EE102525.1|EE102525
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAGCGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|110387464|gb|EC952129.1|EC952129
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|110380114|gb|EC945357.1|EC945357
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|110389773|gb|EC954639.1|EC954639
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|33408664|gb|CF214291.1|CF214291
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCCTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|33409149|gb|CF214776.1|CF214776
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGTEST: gi|22011544|gb|BQ796578.1|BQ796578
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
EST: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAG CAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
genomic: TCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgt ... gtgaaaacagCAAAGTTCTGAACCTTCAGAACGGCTTGTTGGGCTTTCAGATGATGTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCCTGCAGGAAGCACTCGAGATGAAGGGTGGGCAGCATTCAGGAACATCTTGGCAGAGATTAATGAAGCATCGAGGCTTTTCATCTTGCCCAATCAGgtgtccttgtgatccctcttccctgcttccctgtaaaagcattacttttcttcttttagtggggtctcattgcttcttgttttttgggtgtgaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC