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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGGAACTGTGCATTTGTGGATTTCAAGAGTGAAATGTTGGCTTCTCAAGCACTACGCCAATTAAATGGgtacttatctcacagttctttttattagatttccttgttctttaatcacaagagccttattttgtatatcttgtattgtcttcttatgtttggctag

Basic information

species Vitis vinifera
transcript Vv05s0102g00500.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0102g00500.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G09230.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGAGGAACTGTGCATTTGTGGATTTCAAGAGTGAAATGTTGGCTTCTCAAGCACTACGCCAATTAAATGGgtacttatctcacagttctttttattagatt-------------tccttgttctttaatcacaagagccttattttgtatatcttgtattgtcttcttatgtttggctag
|||||| |||  ||| |||||||||||||||| ||||   || |||||||||||||  || |||||||||||||||   | ||  | ||  |  | ||  |||             || || || |||  | |||| ||||     |||       ||| |  |  |  | ||| | |    
ATTGAGAAACGCTGCTTTTGTGGATTTCAAGAATGAAGCTTTTGCTTCTCAAGCACATCGTCAATTAAATGGgtaccagtttcggatttactcatcttccattaatatgctcagactcttttttgtttcttgacaaaagccaatgattgagc----tgtttgatggttgtgtgtgtag----