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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagtgatagttactgattctttgatttcagtttgtttttgtgtcaatgcagaaagggaatttcattctttcgttgtttttctggtttgcgttgt...

Basic information

species Vitis vinifera
transcript Vv05s0094g00900.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717363|gb|FC065278.1|FC065278
EST:     AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAAC                         GTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
genomic: AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagt ... tgtcatacagGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
EST: gi|71876332|gb|DT025387.1|DT025387
EST:     AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAAC                         -TTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
genomic: AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagt ... tgtcatacagGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
EST: gi|161714347|gb|FC062648.1|FC062648
EST:     AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAAC                         GTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
genomic: AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagt ... tgtcatacagGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
EST: gi|161717362|gb|FC065277.1|FC065277
EST:     AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAAC                         GTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
genomic: AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagt ... tgtcatacagGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
EST: gi|161716253|gb|FC068076.1|FC068076
EST:     AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAAC                         GTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
genomic: AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagt ... tgtcatacagGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
EST: gi|110713988|gb|EE090389.1|EE090389
EST:     AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAAC                         GTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT
genomic: AGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagt ... tgtcatacagGTTGTTGCAATTAGAGATATTATACCACCACCTCAGAGGACAGCATTTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGGCGCTAAAGAAAATAGCGAATGCATTCGATAACAAAATCGATGCGAAGAGGACGCTTCGGGAGATCAAGCTTTTGCGGCACATGGATCATGAAAACgtcagtgagtgatagttactgattctttgatttcagtttgtttttgtgtcaatgcagaaagggaatttcattctttcgttgtttttctggtttgcgttgt

- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagggaa