Sequence
atgc intronic sequence ATGC exonic sequenceTGGCAGATACAACATATGGTAGTTGTTGTGTGGATGAGGTTGGAGCATCGCATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtattgttcttcacacttaaaatttttatatcaagctttagaaactttttgggggttttcaagttttgttttgctcaacttatgcattatgtattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G01090.1 (Glycine max), 5'ss of exon 2
TGGCAGATACAACATATGGTAGTTGTTGTGTGGATGAGGTTGGAGCATCGCATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtatt--------gttcttcacac---ttaaaattt---ttatatcaagctttagaaactttttgggggttttcaagttttgttttgctcaa-cttatgcattatgtattg
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TGGCCGACACGGCCTATGGCAGTTGCTGTATTGATGAAGTTGGAGCATCACACATTAATGCTGATTGTGTCATACATTATGGTCATACTTGTTTTAGTCCgtcagtacttctaaaacattttttatatccttttcaatttcagtttaattaagagttgagattctatttcattatttcatatgct--tctgttgaatcttcttttctctgtgcag
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G59630.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGCAGATACAACATATGGTAGTTGTTGTGTGGATGAGGTTGGAGCATCGCATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtattgttcttcacacttaaaatttttatatcaagctttagaaactttttgggggttttcaagttttgttttgctcaacttatgcattatgtattg
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TGGCTGACACAACTTATGGTAGTTGCTGTATTGATGAAGTTGGAGCTTTGCATATTGATTCTGAATGTGTTGTTCATTACGGTCAAACATGTCTAAGCCCgtgagtcataaacccttttcttca--tctatgtaattgctttaaattcccttgttgaaacaatgtcttattgtgaggttctatgttttcacag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71860933|gb|DT009988.1|DT009988EST: CATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCC GACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTAT
genomic: CATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtattg ... gtatttgcagGACATCAAATCTTCCAGCATTCTTTGTTTTTGGGAAGGCACCCATCAGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCAGATACAACATATGGTAGTTGTTGTGTGGATGAGGTTGGAGCATCGCATATTAATGCTGACTGCGTTGTTCATTATGGACACACATGTTTGAGTCCgtgagtattgttcttcacacttaaaatttttatatcaagctttagaaactttttgggggttttcaagttttgttttgctcaacttatgcattatgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa