1 5' 3' | 2 5' 3' |
GAAAAGAAAGCAAGAAGAAATAAGCAACTGTGTTGAACATTGCAGTGTTCCAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAAgtaagctgccttttgtttgtttgtttgtttgttttgttttgtttttttgtataagttctctgtttactctttgcttgggtgcaaagaaaaccaaggaaaa...
species | Vitis vinifera |
transcript | Vv05s0077g02200.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAA GAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCCEST: gi|110383512|gb|EC947890.1|EC947890
genomic: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAAgtaagctgcc ... atggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
EST: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAA GAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
genomic: CAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAAgtaagctgcc ... atggatgtagGAAAGGTTGAACAGATCATTGATGGTCTGCCAGGACAAGTTTGAGTCAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAGAAAGCAAGAAGAAATAAGCAACTGTGTTGAACATTGCAGTGTTCCAGTTGTTAATGCTCAAGCTCTGGTTGAGAATGAGATGGCTAAATTTCAAgtaagctgccttttgtttgtttgtttgtttgttttgttttgtttttttgtataagttctctgtttactctttgcttgggtgcaaagaaaaccaaggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaa