1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGAATCACAGTGTGGAGAAAAACATTGCGGAGTATATCAAGAAGGAGTTCGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccgtttaatcatttttcttataatatatgtaatatcaatttctactggatagattaattgatgaatcagcggtggtgttctgttgttacatat...
species | Vitis vinifera |
transcript | Vv05s0077g02110.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|349822936|gb|FQ399915.1|FQ399915
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110705677|gb|EE082803.1|EE082803
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110365922|gb|EC929475.1|EC929475
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|30136271|gb|CB921609.1|CB921609
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110428464|gb|EC994938.1|EC994938
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|34544540|gb|CF512772.1|CF512772
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGACAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|34543853|gb|CF512085.1|CF512085
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGACAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|30127749|gb|CB913088.1|CB913088
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|32456411|gb|CD797585.1|CD797585
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: ATAAGAAGCATGGACCTACCTGGCACATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110702866|gb|EE079212.1|EE079212
genomic: ATAAGAAGCATGGACCTACCTGG--CATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|34362768|gb|CF404353.1|CF404353
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110376712|gb|EC941782.1|EC941782
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|30131911|gb|CB917250.1|CB917250
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|34416663|gb|CF415417.1|CF415417
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110384168|gb|EC948587.1|EC948587
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACCEST: gi|110691067|gb|EE068745.1|EE068745
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
EST: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCG GTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
genomic: CGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccg ... ttttctacagGTTCATATGTGACTCATGAAACAAACCATTTTGTTTACTTCTATTTGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAATCACAGTGTGGAGAAAAACATTGCGGAGTATATCAAGAAGGAGTTCGATAAGAAGCATGGACCTACCTGGCATTGCATTGTCGGTCGCAATTTCGgtaattcccgtttaatcatttttcttataatatatgtaatatcaatttctactggatagattaattgatgaatcagcggtggtgttctgttgttacatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA