Sequence
atgc intronic sequence ATGC exonic sequenceAGCGGGTTTGATATTGTTATAAGCGATGTACACATGCCCGACATGGACGGATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCAgtaagtatgctctttcaatcacttaagatggagttagatcactatgaaaccggtatttttttttttagtttatgtttaaattctaatttttgtctctctaattattgtacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G03380.1 (Glycine max), 5'ss of exon 2
AGCGGGTTTGATATTGTTATAAGCGATGTACACATGCCCGACATGGACGGATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCAgtaagtatgctctttcaatcacttaagatggagttagatcactatgaaaccggtatttttttttttagtttatgtttaaattctaatttttgtctctctaattattgtacag
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AATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATCAgtaagaa-actcgtttgacctgcttagatctatttttttgtggactgcattgatgttgggtctgacatgttttgtgtga----tggttgcag--------------------
upper sequence: Vv05s0077g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G37220.1 (Glycine max), 5'ss of exon 2
AGCGGGTTTGATATTGTTATAAGCGATGTACACATGCCCGACATGGACGGATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCAgtaagtatgctctttcaatcacttaagatggagtt-----agatcactatgaaaccggtatttttttttttagt-ttatgtttaaattctaatttttgtctctctaattattgtacag
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AATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATAAgtaagaa-actcgtctgacctgtttagatctattttttgtggactgcattgatgtcggttctgacatgttttgtgtgatggttgcag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458935|gb|CD800109.1|CD800109EST: ATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCA TGATGTCTGCTGATGACGGAAAACATGTTGTGATGAAGGGTGTCACTCATG
genomic: ATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCAgtaagtatgc ... tattgtacagTGATGTCTGCTGATGACGGAAAACATGTTGTGATGAAGGGTGTCACTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGGGTTTGATATTGTTATAAGCGATGTACACATGCCCGACATGGACGGATTCAAGCTCCTTGAGCACATTGGGCTTGAGATGGACCTGCCTGTTATCAgtaagtatgctctttcaatcacttaagatggagttagatcactatgaaaccggtatttttttttttagtttatgtttaaattctaatttttgtctctctaattattgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA