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TGTAAACAGAGGTTGTGTTCCTTCTAAAGCTCTTCTGGCTGTAAGTGGTCGAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaataatcacagttcatcaagtttttgaagcataaacttaacacagacaacaaattccgaaatataacatcattgtgctattgttttatactga...
species | Vitis vinifera |
transcript | Vv05s0077g01210.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|351031178|gb|FQ445005.1|FQ445005
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|71877655|gb|DT026710.1|DT026710
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|71877913|gb|DT026968.1|DT026968
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|351022014|gb|FQ437801.1|FQ437801
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|351014262|gb|FQ434851.1|FQ434851
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|351023248|gb|FQ432631.1|FQ432631
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAACEST: gi|71878131|gb|DT027186.1|DT027186
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
EST: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAG GTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
genomic: GAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaat ... tgaaactcagGTTTCAGCTGCAGGGTATGACAGACAAGGAGTGGCTGACCATGCCAATAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAAACAGAGGTTGTGTTCCTTCTAAAGCTCTTCTGGCTGTAAGTGGTCGAATGCGGGAACTTCAGAGTGAGCATCACTTGAAGGCTTTGGGTTTGCAGgtaatagaataatcacagttcatcaagtttttgaagcataaacttaacacagacaacaaattccgaaatataacatcattgtgctattgttttatactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaaa