Sequence
atgc intronic sequence ATGC exonic sequenceCGTGTTAAGGTCTACCGTCTGAATGACGATGGGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgtaactttgatcttgatctggcttaatgtttattttgctgacataaattttcaagttactctgtaacatgtggtgaactatcaatagtgcttggttaaaagttgacttgcatagtgattgttgcaaatgttgtaacacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G04260.1 (Glycine max), 5'ss of exon 2
CGTGTTAAGGTCTACCGTCTGAATGACGATGGGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgtaactttgat-----cttgatctg-gcttaatgtttattttgctgacataaattttcaagttactctgtaacatgtggtgaactatcaatagtgcttggttaaaagttgacttgcatagtgattgttgcaaatgttgtaacacag
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CGTGTCACGGTCTACCGTCTGAAGGATGATGGGAAATGGGATGACCAGGGCACTGGGCATGTCACTGTTGATTATTTGGAGgtttgtacactgttttggtaaagctttcatttgtgaccagcacatatgttacatatgtgggcacttctgtttgtagacattgtatgtttgacttcccctt------------------------------------------------------
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G15270.1 (Glycine max), 5'ss of exon 1
CGTGTTAAGGTCTACCGTCTGAATGACGATGGGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgtaactttgat-----cttgatctg-gcttaatgtttattttgctgacataaattttcaagttactctgtaacatgtggtgaactatcaatagtgcttggttaaaagttgacttgcatagtgattgttgcaaatgttgtaacacag
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CGTGTCAAGGTCTACCGTATGAATGATGACGGGAAATGGGATGACAAGGGCACTGGGCATGTCACTGTTGATTATTTGGAGgtttgtacactgttttggtaaagctttcatttgtgaccagcatgtatattacatatgtgagcacttctgtttggggacattgtatgcttgacttccgctt------------------------------------------------------
upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G03570.1 (Glycine max), 5'ss of exon 2
CGTGTTAAGGTCTACCGTCTGAATGACGATGGGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgtaactttgatcttgatctggcttaatgtttattttgctgacataaattttcaagttactctgtaacatgtggtgaactatcaatagtgcttggttaaaagttgacttgcatagtgattgttgcaaatgttgtaacacag
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CCTGTCAAGGTATATCGTCTGAATGATGATGGGAAATGGGATGACCAGGGTACTGGACATGTCTCTGTTGATTATTTAGAGgtttgaaaatcttttttat-ttgatgaagctt-----ttatttg--tgacacgacagcttgggtaatggtatcatttactctgtgtagcttcttacacctggtggaaa----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712627|gb|FC061950.1|FC061950EST: GGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAG AGAACAGAAGAGTTGGGTTTGTTTGTAATTGATGAAGAAGACCACGAAACA
genomic: GGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgt ... tgtaacacagAGAACAGAAGAGTTGGGTTTGTTTGTAATTGATGAAGAAGACCACGAAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTGTTAAGGTCTACCGTCTGAATGACGATGGGAAATGGGATGACCAGGGAACTGGACACGTCAGTGTTGATTACATGGAGgtttgtctgtaactttgatcttgatctggcttaatgtttattttgctgacataaattttcaagttactctgtaacatgtggtgaactatcaatagtgcttggttaaaagttgacttgcatagtgattgttgcaaatgttgtaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA