Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATGGGGTGAAACCCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttcttcttaagatctatgcctttcagaattttgtaaagttgtgtttggatctcagggaaaatgagggaaaagaaaggattttcaccacttttctttttccttgatctttcttgggtctaaatggattgggtaaagaaaaaaaaaagagctgagattctgaactaaagtaaatcgtatgatcacgagcag

Basic information

species Vitis vinifera
transcript Vv05s0077g01070.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71868324|gb|DT017379.1|DT017379
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110390636|gb|EC955556.1|EC955556
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|26262048|gb|CA813111.1|CA813111
EST:     CCGACGCAGAAACGCTGGACATNGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110702564|gb|EE081424.1|EE081424
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110707481|gb|EE083930.1|EE083930
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110371152|gb|EC934947.1|EC934947
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110394618|gb|EC959809.1|EC959809
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110379108|gb|EC944284.1|EC944284
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110364312|gb|EC923847.1|EC923847
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351043949|gb|FQ431380.1|FQ431380
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110726202|gb|EE101775.1|EE101775
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|349814131|gb|FQ414750.1|FQ414750
EST:     CCGACGCAGAAACGCTGGACATTGTCAACTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|71868813|gb|DT017868.1|DT017868
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|30251624|gb|CB969357.1|CB969357
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|87584440|gb|DY473620.1|DY473620
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|26267663|gb|CA818726.1|CA818726
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351043996|gb|FQ431427.1|FQ431427
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110369608|gb|EC933772.1|EC933772
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|71873183|gb|DT022238.1|DT022238
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110379209|gb|EC944389.1|EC944389
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351022985|gb|FQ428894.1|FQ428894
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110688269|gb|EE066629.1|EE066629
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110385760|gb|EC950312.1|EC950312
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|349807840|gb|FQ402231.1|FQ402231
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110361670|gb|EC925162.1|EC925162
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|349827143|gb|FQ421416.1|FQ421416
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110393932|gb|EC959521.1|EC959521
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351032190|gb|FQ460447.1|FQ460447
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCGGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|33406144|gb|CF211771.1|CF211771
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351016279|gb|FQ446139.1|FQ446139
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|26265610|gb|CA816673.1|CA816673
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|26261907|gb|CA812970.1|CA812970
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110705834|gb|EE083136.1|EE083136
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|26263870|gb|CA814933.1|CA814933
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAC                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCACGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|349824196|gb|FQ417583.1|FQ417583
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110427794|gb|EC994245.1|EC994245
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110689056|gb|EE064944.1|EE064944
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110732453|gb|EE107755.1|EE107755
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110395453|gb|EC961118.1|EC961118
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGAGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|33406236|gb|CF211863.1|CF211863
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110389951|gb|EC954829.1|EC954829
EST:     AATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: AATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|352785801|gb|FQ475804.1|FQ475804
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110703478|gb|EE080357.1|EE080357
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|32459139|gb|CD800313.1|CD800313
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|22011106|gb|BQ796140.1|BQ796140
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATTCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110686402|gb|EE064002.1|EE064002
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110382944|gb|EC947277.1|EC947277
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351016984|gb|FQ424411.1|FQ424411
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110425553|gb|EC991941.1|EC991941
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110364750|gb|EC928233.1|EC928233
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|30251571|gb|CB969304.1|CB969304
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110727022|gb|EE103339.1|EE103339
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|110367443|gb|EC931376.1|EC931376
EST:     CCGACGCAGAAACGCTGGACATTGTTAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|351019348|gb|FQ429508.1|FQ429508
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
EST: gi|34320492|gb|CF373246.1|CF373246
EST:     CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGAT                         ATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC
genomic: CCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttc ... tcacgagcagATTGTGGTGGTGATGAAGGTATACTGGGGCGATGCTCGGGAGAAGATATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGAGTGAGTTTTCTGACCCGATTATATCGAAGAAGTATGGGGTGAAACCCGACGCAGAAACGCTGGACATTGTCAATTGTGTTGCCAGGCAGAAAGATgtaaattttcttcttaagatctatgcctttcagaattttgtaaagttgtgtttggatctcagggaaaatgagggaaaagaaaggattttcaccacttttctttttccttgatctttcttgggtctaaatggattgggtaaagaaaaaaaaaagagctgagattctgaactaaagtaaatcgtatgatcacgagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA