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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTCCTAAGAATCAGCTTCCCATCTCACAGACCCTCATGCTTGGAGACAGGTGAGCTCCTTGATATTGAGCATCACATCGTCTACAATGTGTTTCCTgtaagtttcagtaaactgttattctcactaatatcacctaacatggttggtgcagttggatgtttcaacttgttgctttggattttctatgtgatcataa...

Basic information

species Vitis vinifera
transcript Vv05s0077g00250.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00250.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G03870.1 (Glycine max), 5'ss of exon 2
AGAGTTCCTAAGAATCAGCTTCCCATCTCACAGACCCTCATGCTTGGAGACAGGTGAGCTCCTTGATATTGAGCATCACATCGTCTACAATGTGTTTCCTgtaagtttcagtaaactgttattctcactaatatcacctaacatggttggtgcagttggatgttt-caacttgttgctttggattttctatgtgatcataa-
| |||| || | ||  ||||| |||  ||||||||| || || |||||||| || ||||| |||||||||||||||||||| ||||| |||| |||||||||||||  |  | | |     || |      | |    |   ||  | ||| || | |    |||     |||||  ||   ||||  ||  ||||   |  
ACAGTTTCTCAAAACTAGCTTTCCAGTTCACAGACCTTCGTGTTTGGAGACTGGGGAGCTGCTTGATATTGAGCATCACATGGTCTATAATGCGTTTCCTgtaagtcacgtttagcatgccttgtactcttttttgagtgctat--tcggttcattggcgcctttatgtgttgttttttcctatttgatagttgattgaatt

upper sequence: Vv05s0077g00250.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G36730.1 (Glycine max), 5'ss of exon 2
AGAGTTCCTAAGAATCAGCTTCCCATCTCACAGACCCTCATGCTTGGAGACAGGTGAGCTCCTTGATATTGAGCATCACATCGTCTACAATGTGTTTCCTgtaagtttcagtaaactgttattctcactaatatcacctaacatggttggtgcagttggatgtttcaacttgttgctttgg--attttctatgtgatcataa---
| |||| || | ||  ||||| |||  ||||||||| || ||  ||||||| || ||||| |||||||||||||||||||| ||||| |||| |||||||||||||  |  | | |     || | |||  | |    |   ||  ||||| | |||||  | ||  |  ||||  |||    |||| |||  ||||   |    
ACAGTTTCTGAAAACTAGCTTTCCAGTTCACAGACCTTCGTGTCTGGAGACTGGGGAGCTGCTTGATATTGAGCATCACATGGTCTATAATGCGTTTCCTgtaagtcccgtttagcccgccttgt-actctttttgtgtgctat--ttggttc-gttgg-cgcttgtatgtgttatttttcctatttgctagttgattgaattgg