Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAGGGAAGGGCAACAGGGAGCAGCAATTCTACCTCTGGTTCGACCCCACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaaacctaaacccaccttccaactctacttccatttttctataaactaaaactgaactgggtgttggttttttcttcag

Basic information

species Vitis vinifera
transcript Vv05s0062g00240.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190411|gb|CF609760.1|CF609760
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGCCGCGACAACGTTCCCATAAGGCTATTCAAGAATGCAAAATCA
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGG-TG-GACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCA
EST: gi|110384516|gb|EC948957.1|EC948957
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|161712707|gb|FC062279.1|FC062279
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|352785797|gb|FQ475800.1|FQ475800
EST:     ACCCGTAACTTCCACAGCTATTCCATCATCTGGACCGCCCGACACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|33407410|gb|CF213037.1|CF213037
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTCCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|110723199|gb|EE100237.1|EE100237
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAAGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|71856339|gb|DT005394.1|DT005394
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|71857510|gb|DT006565.1|DT006565
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|71859664|gb|DT008719.1|DT008719
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|33407341|gb|CF212968.1|CF212968
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTCCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
EST: gi|71856628|gb|DT005683.1|DT005683
EST:     ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCAT                         TTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT
genomic: ACCCGTAACTTCCACACCTATTCCATCATCTGGACCGCCCGGCACATCATgtacgtgtaa ... ttttcttcagTTTCTTGGTGGACAACGTTCCCATAAGGCTATTCAAGAATGCAGAATCAAT