1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTACCACATGGAGTCCACTTGCATCAGGAGTGCTTACTGGAAAATACAACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttctgagtgattttaaatttgagtgctgcattgtactgttatgttatggttctccaatattcactgtttacttatttcaaatttacaatttca...
species | Vitis vinifera |
transcript | Vv05s0051g00650.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|22012551|gb|BQ797585.1|BQ797585
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110700435|gb|EE078471.1|EE078471
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGCAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110705491|gb|EE082401.1|EE082401
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110427791|gb|EC994242.1|EC994242
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110372631|gb|EC936815.1|EC936815
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|161715169|gb|FC064278.1|FC064278
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110715171|gb|EE092916.1|EE092916
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110386404|gb|EC950997.1|EC950997
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110705588|gb|EE082610.1|EE082610
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGAEST: gi|110362011|gb|EC925517.1|EC925517
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
EST: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAA AATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
genomic: ACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttc ... tgccttctagAATCTTGCTAGCCGATCCCTTGTCGATGATGTGCTGAGAAAAGTAAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTACCACATGGAGTCCACTTGCATCAGGAGTGCTTACTGGAAAATACAACAAGGGAACAATACCCCAGGATAGTCGATTTGCCCTGGAGAATTACAAAgtaaaacttctgagtgattttaaatttgagtgctgcattgtactgttatgttatggttctccaatattcactgtttacttatttcaaatttacaatttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA