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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATTTTCCATTCAGAAAACCAATAAAAGAAATTCCCGGAAAATTGTTTCAGTCATGGCACCCCAACAATCGCCACGTTCTCCTTCCACCTCTGGTTCAgttcggtttctttctttctttctttctttctttcttcatttctgcttcttcttcattatatatttataatttgcattcgattgttcttttctgtggtgggtattagtatttgatggtttatattagtgggattttggattgttttcag

Basic information

species Vitis vinifera
transcript Vv05s0049g01980.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708347|gb|FC057036.1|FC057036
EST:     CAGTCATGGCACCCCAACTATCGCCACGTTCTCCTTCCACCTCTGGTTCA                         GTAAAGACTGCAATGACCATGACCGAGAAGATCTTGGCCAGGGCTTCTGAA
genomic: CAGTCATGGCACCCCAACAATCGCCACGTTCTCCTTCCACCTCTGGTTCAgttcggtttc ... ttgttttcagGTAAAGACTGCAATGACCATGACCGAGAAGATCTTGGCCAGGGCTTCTGAA
EST: gi|352768905|gb|FQ468096.1|FQ468096
EST:     CAGTCATGGCACCCCAACAATCGCCACGTTCTCCTTCCACCTCTGGTTCA                         GTAAAGACTGCAATGACCATGACCGAGAAGATCTTGGCCAGGGCTTCTGAA
genomic: CAGTCATGGCACCCCAACAATCGCCACGTTCTCCTTCCACCTCTGGTTCAgttcggtttc ... ttgttttcagGTAAAGACTGCAATGACCATGACCGAGAAGATCTTGGCCAGGGCTTCTGAA
EST: gi|156738921|gb|EV243042.1|EV243042
EST:     CAGTCATGGCACCCCAACAATCGCCACGTTCTCCTTCCACCTCTGGTTTA                         GTAAAGACTGCAATGACCATGACCGAGAAGATCTTGGCCAGGGCTTCTGAA
genomic: CAGTCATGGCACCCCAACAATCGCCACGTTCTCCTTCCACCTCTGGTTCAgttcggtttc ... ttgttttcagGTAAAGACTGCAATGACCATGACCGAGAAGATCTTGGCCAGGGCTTCTGAA