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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGGTCATAAGAATTACAATATGAGTGTTCTCCAGCAACATGTAGCCTTCTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctcactttcaaaactataccaataatttggatccatcgtctctacttaattttttcttttgtacgtcttggaaacag

Basic information

species Vitis vinifera
transcript Vv05s0049g01780.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305618|gb|CB982412.1|CB982412
EST:     CTTTGACCAAGACGACAATGGGGTCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|27581814|gb|CB004509.1|CB004509
EST:     CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|30305765|gb|CB982559.1|CB982559
EST:     CTTTGACCTAGACGACAATGGGGTCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|29783233|gb|CB349272.2|CB349272
EST:     CTTTGACCAAGACGACAATGGGGTCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|110400288|gb|EC966846.1|EC966846
EST:     CTTTGACCAAGACGACAATGGGGTCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|30135359|gb|CB920697.1|CB920697
EST:     CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|29782913|gb|CB348630.2|CB348630
EST:     CTTTGACCAAGACGACAATGGGGTCGTTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: CTTTGACCAAGACGACAATGGGATCGTTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
EST: gi|29783277|gb|CB349356.2|CB349356
EST:     TTTACCCTTGGGAGACCTATACCG                         GCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG
genomic: TTTACCCTTGGGAGACCTATACCGgtaccatctc ... ttggaaacagGCCTGCGTGCTGTTGGTTTTAACACGATTGCCTCACTTATTATGGCGATTG