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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAAACCCAGAAAAACCCTAAGCCCCGTCTCTCCATCTACCCCCCTTGCATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctctgcaactctcatttttctttgttttctttctgatcaatattctatttgttttgcattgttttatttaatctgaatgtgaatcgtttctatttctgtag

Basic information

species Vitis vinifera
transcript Vv05s0049g01310.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581928|gb|CB004623.1|CB004623
EST:     CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110690588|gb|EE067820.1|EE067820
EST:     CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110691773|gb|EE070259.1|EE070259
EST:     CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110397687|gb|EC963510.1|EC963510
EST:     TTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: TTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110724784|gb|EE100916.1|EE100916
EST:     CATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|71879325|gb|DT028380.1|DT028380
EST:     CCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|77588138|gb|DV223280.1|DV223280
EST:     CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|71883824|gb|DT032879.1|DT032879
EST:     CTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110375750|gb|EC940763.1|EC940763
EST:     CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110689055|gb|EE064943.1|EE064943
EST:     CTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|34320490|gb|CF373244.1|CF373244
EST:     TGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: TGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|27584222|gb|CB006917.1|CB006917
EST:     ATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: ATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110731703|gb|EE106347.1|EE106347
EST:     ATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: ATCTTCCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA
EST: gi|110705265|gb|EE081950.1|EE081950
EST:     CCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGA
genomic: CCATTTTTCCCCTCCCTGCTGTCAGCCGCGCCCTAGCAAATATGgtgagtctct ... atttctgtagCCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGA