Sequence
atgc intronic sequence ATGC exonic sequenceAGACTGCTCAGGATCAGATTGCCAAGGGTGGTTATTCAATTATTCTTGAACCAAAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactgttttatgatgcttctctcacaatctgatttttcatcatgtatttaacatatacatattggcattgtcggaaactcattttggtttatgga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G00690.1 (Glycine max), 5'ss of exon 2
AGACTGCTCAGGATCAGATTGCCAAGGGTGGTTATTCAATTATTCTTGAACCAAAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactgtt--ttatgatgcttctctcacaatctgatttttcatca-tgtatttaacatatacatattggcattg-tcggaaactcattttggtttatgga
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AGGCTGCTCAAGATCAAATAGCTAAGGGTGGTTATTCAATTGTTCTTGTGCCTGAGCATGGCAGTGACGCCTCATGGTTTACCAAGGGAACTGTTGAAAGgtttggcttgttagttatcataatttttttttgttaactattcctatcaatgcaacttgaa-atttgaattgacactgatctttcttttaaatatgcttat---
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G35020.1 (Glycine max), 5'ss of exon 2
AGACTGCTCAGGATCAGATTGCCAAGGGTGGTTATTCAATTATTCTTGAACCA---AAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactgttttatgatgcttctctcacaatctgattttt---catcatgtatttaacatatacatattggcattgtcggaaactcattttggt-ttatgga
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---CTGCTCAGAATCAGATGGACAAGGGTGGTTATTCAATTGTTCTTGAGCCACCTGAGGGTAACACTGATACCTCATGGTTTACCAAGGGAACTGTTGAAAGgtttg-act-ttttagcattttggtttattgttctgttcagcggagattgaaagttgaatccatttaaacatgc-ttcttagagattatcgttggtattatta-
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G32560.1 (Glycine max), 5'ss of exon 2
----------------------------------------AGACTGCTCAGGATCAGATTGCCAAGGGTGGTTATTCAATTATTCTTGAACCA---AAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactgttttatgatgcttctctcacaatctgatttttcatca--tgtatttaacatatacatattggca-ttgtcggaaactcatt-ttggtt-tatgga----------------
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ATTGCCTCAGGCTTGCTCAACCCTTTTCTTTCTCACTTGAAGGCTGCCCAGAATCAGATGGACAAGGGTGGTTATTCAATTGTTCTTGAGCCGCCCGAGGgtaacactgatacctcatggtttaccaagggaactgttgaaaggtttg-actttttagttgt-tttggtttattgtttggttctccagagattgaaagtagaatccatttacgcatgcttcttggagaattatcattggtagtattgtattgtattgtatccag
upper sequence: Vv05s0049g01280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G00660.1 (Glycine max), 5'ss of exon 2
AGACTGCTCAGGATCAGATTGCCAAGGGTGGTTATTCAATTATTCTTGAACCAAAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactgtt-ttatga--tgcttctctcacaatctgatttttcatcatgtatttaacatatacatattggcattgtcgg-aaactcattttggtttatgga
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AGGCTGCTCAAGATCAAATAGCTAAGGGTGGTTATTCAATTGTTCTTGTGCCTGAGCATGGCAGTGACGCCTCATGGTTTACCAAGGGAACAATTGAAAGgtgtggctagttatcataacttgttattttgttaatt--attcctattaatgtattttggaagttggaatttgaattgtcactgatcttttgtttaaatatg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691481|gb|EC978576.1|EC978576EST: CCAAAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAG GTTTGTTCGATTTGTGAGCACTCGCAGAGGTATTGGAACGGGTGTACACAA
genomic: CCAAAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactg ... gtttttctagGTTTGTTCGATTTGTGAGCACTC-CAGAGGTATTGGAACGGGTGTACACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACTGCTCAGGATCAGATTGCCAAGGGTGGTTATTCAATTATTCTTGAACCAAAACCTGGCAGTGATGCAACATGGTTTGCCAAGGGCACTGTGGAAAGgtttgtactgttttatgatgcttctctcacaatctgatttttcatcatgtatttaacatatacatattggcattgtcggaaactcattttggtttatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggaaac