1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGGGATGACGATGCTGATCTTGGCAGCAAGCTAGATGAATCTTCAAGCAAGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttctagtagctgagctggaatcagcaccagtactagcctcctcttctctttgacactttgacttgtttatttttgcttcttatattcagttttcttttattgatggtgtcatgtttctgcttctgattttgaag
species | Vitis vinifera |
transcript | Vv05s0049g01180.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATACCAAAGAGCTTTCCA GTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCEST: gi|110384343|gb|EC948773.1|EC948773
genomic: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttct ... gattttgaagGTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCC
EST: GATGGTGAAGATGATGTCATGCCAAAGAGCATTCCA GTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTTEST: gi|71855436|gb|DT004491.1|DT004491
genomic: GATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttct ... gattttgaagGTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTT
EST: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCA GTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTTEST: gi|110357412|gb|EC920933.1|EC920933
genomic: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttct ... gattttgaagGTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTT
EST: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCA GTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTTEST: gi|161720939|gb|FC070673.1|FC070673
genomic: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttct ... gattttgaagGTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTT
EST: AGTTTGGCCAGGAAGATGGTGAAGATGATGTGATACCAAAGAGCTTTCCA GTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTTEST: gi|110722017|gb|EE097877.1|EE097877
genomic: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttct ... gattttgaagGTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTT
EST: AGTTTGGCCAGGAAGATGGTGAAGATGATGTGATACCAAAGAGCTTTCCA GTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTT
genomic: AGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttct ... gattttgaagGTTTGTGATGATCGGCATTCTGAATTAATTCCCTGCCTAGATAGGAATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGATGACGATGCTGATCTTGGCAGCAAGCTAGATGAATCTTCAAGCAAGTTTGGCCAGGAAGATGGTGAAGATGATGTCATGCCAAAGAGCATTCCAgtaagtttctagtagctgagctggaatcagcaccagtactagcctcctcttctctttgacactttgacttgtttatttttgcttcttatattcagttttcttttattgatggtgtcatgtttctgcttctgattttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA