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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAAGAGGTTCCACAAATCCAACGGCTATGCTTGCATCTCTGGTGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccctctctggttggttgcttagaaaatatggccaaaaactaaaatgaaaatttttgaactgtattgtgaaagatagaactcaatgaaatggatt...

Basic information

species Vitis vinifera
transcript Vv05s0049g01000.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351023110|gb|FQ432493.1|FQ432493
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|30251462|gb|CB969195.1|CB969195
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|351019104|gb|FQ429264.1|FQ429264
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|351043109|gb|FQ451282.1|FQ451282
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|351026930|gb|FQ436583.1|FQ436583
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|351026635|gb|FQ436288.1|FQ436288
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|30325386|gb|CD008648.1|CD008648
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|30327540|gb|CD010802.1|CD010802
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|110364060|gb|EC927702.1|EC927702
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|32269991|gb|CD719150.1|CD719150
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|32269556|gb|CD718715.1|CD718715
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|30251536|gb|CB969269.1|CB969269
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|349822500|gb|FQ412764.1|FQ412764
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|30303048|gb|CB979842.1|CB979842
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
EST: gi|32247601|gb|CD713420.1|CD713420
EST:     TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAG                         GTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT
genomic: TGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccct ... tcaattatagGTGTATGAGATGGAGACGAATTATTTACAAGATTCAAGCCATTTTGGGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAAGAGGTTCCACAAATCCAACGGCTATGCTTGCATCTCTGGTGAGCAAGAGAGAGAGACTTCAAGATGAGCTTCGGGTCATTGAGAAGCAGgtgattccctctctggttggttgcttagaaaatatggccaaaaactaaaatgaaaatttttgaactgtattgtgaaagatagaactcaatgaaatggatt

- - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatagaa