1 5' 3' | 2 5' 3' |
CTGCTTCCTTACCTGAGAATGATTGCCGCTATGCAATTTATGACTTTGATTTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGgtgtgtttctttttgaactgatcattttacatatgattgtagtagctgtttaaatcaaaagcacttctccttagttgttcgagtcttgcctcattatatt...
species | Vitis vinifera |
transcript | Vv05s0049g00980.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATG GTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAAEST: gi|37188304|gb|CF607653.1|CF607653
genomic: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGgtgtgtttct ... ttgctttcagGTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAA
EST: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATG GTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAAEST: gi|37183635|gb|CF602989.1|CF602989
genomic: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGgtgtgtttct ... ttgctttcagGTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAA
EST: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATG GTCCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCEST: gi|46917593|gb|CN546922.1|CN546922
genomic: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGgtgtgtttct ... ttgctttcagGTCCCC-TTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGC
EST: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATG GTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAA
genomic: TTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGgtgtgtttct ... ttgctttcagGTCCCCTTCAGTATCTCGAATCCGTGCCAAGATGCTGTATGCTACATCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTTCCTTACCTGAGAATGATTGCCGCTATGCAATTTATGACTTTGATTTTGTTACTTCTGAGAACTGCCAAAAGAGCAAGATATTCTTCATTGCATGgtgtgtttctttttgaactgatcattttacatatgattgtagtagctgtttaaatcaaaagcacttctccttagttgttcgagtcttgcctcattatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc