1 5' 3' | 2 5' 3' |
AGTTCTGAAATGCCTCAAAAATATGGACTTGAAAACAACTGCCATCCACTCCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGgtacttctctctttcaattttcccctcttttcttttcttttcttttcttttcttttcttcctttcattttctattctccttctcctcagatagaaaaagc...
species | Vitis vinifera |
transcript | Vv05s0020g04780.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAG ATTGGAGCTGGAATAGTAGAAAGGGAGGTGGGAAGAACCCTAGATGAAGTTEST: gi|110699072|gb|EE077298.1|EE077298
genomic: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGgtacttctct ... ttacgattagATTGGAGCTGGAATAGTAGAAAGGGAGGTGGGAAGAACCCTAGATGAAGTT
EST: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAG ATTGGAGCTGGAATAGTAGAAAGGGAGGTGGGAAGAACCCTAGATGAAGTTEST: gi|77586378|gb|DV222304.1|DV222304
genomic: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGgtacttctct ... ttacgattagATTGGAGCTGGAATAGTAGAAAGGGAGGTGGGAAGAACCCTAGATGAAGTT
EST: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAG ATTGGAGCTGGAATEST: gi|34320502|gb|CF373256.1|CF373256
genomic: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGgtacttctct ... ttacgattagATTGGAGCTGGAAT
EST: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAG ATTGGAGCTGGAATAGTAGAAAGGGAGGTGGGAAGAACCCTAGATGAAGTT
genomic: CCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGgtacttctct ... ttacgattagATTGGAGCTGGAATAGTAGAAAGGGAGGTGGGAAGAACCCTAGATGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCTGAAATGCCTCAAAAATATGGACTTGAAAACAACTGCCATCCACTCCCAATTTTCTCCTCAGCAATTTTCAGCAGCTGTCAAGATACAAACCCAGgtacttctctctttcaattttcccctcttttcttttcttttcttttcttttcttttcttcctttcattttctattctccttctcctcagatagaaaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa