1 5' 3' | 2 5' 3' | 3 5' 3' |
TACAAATTTTGTTTCCAAAATTCTTATGCAACACCTGAGACTGTCTCTTTCTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaattttttttgtcaatattttcttcttgtcatattcttatatcttatcgctatttctatatattttataattttaagtgctattgcaaatga...
species | Vitis vinifera |
transcript | Vv05s0020g04150.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|32244957|gb|CD710776.1|CD710776
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|30304834|gb|CB981628.1|CB981628
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|351041440|gb|FQ447567.1|FQ447567
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|22009989|gb|BQ795023.1|BQ795023
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|18458532|gb|BM436810.1|BM436810
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110391808|gb|EC956810.1|EC956810
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110689594|gb|EE065965.1|EE065965
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|30329489|gb|CD012751.1|CD012751
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|351045647|gb|FQ440832.1|FQ440832
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110715167|gb|EE092904.1|EE092904
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|71879666|gb|DT028721.1|DT028721
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|87585357|gb|DY474109.1|DY474109
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110707896|gb|EE084817.1|EE084817
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110386948|gb|EC951583.1|EC951583
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|51051053|gb|CO818862.1|CO818862
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|71878189|gb|DT027244.1|DT027244
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|32245175|gb|CD710994.1|CD710994
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|27582549|gb|CB005244.1|CB005244
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110373933|gb|EC938946.1|EC938946
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110367618|gb|EC931562.1|EC931562
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|46917814|gb|CN547143.1|CN547143
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110715764|gb|EE094189.1|EE094189
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|71877713|gb|DT026768.1|DT026768
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|71878721|gb|DT027776.1|DT027776
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110427983|gb|EC994440.1|EC994440
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGGEST: gi|110701935|gb|EE080075.1|EE080075
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
EST: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATG AACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
genomic: CTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaa ... tttgttacagAACATTTGGACCCCATAAATGTTAAAATTGCTGAGTTGAGAGAGGCACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAATTTTGTTTCCAAAATTCTTATGCAACACCTGAGACTGTCTCTTTCTATATACATGTTGGCCATATTCCCAATGAGCACAACCTCGCCAAAGATGgtatgttcaattttttttgtcaatattttcttcttgtcatattcttatatcttatcgctatttctatatattttataattttaagtgctattgcaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG