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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTTCCCCCTGTACCCTTGCTGAAGGCTTTTCTGAGAGATTCAAAGAAGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttgcatccatccatcctgaatgatattctttgttgtgtccattcttataagcaaggtctacatgaatttatggaactggatttccttcttatt...

Basic information

species Vitis vinifera
transcript Vv05s0020g03470.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715868|gb|FC065192.1|FC065192
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|71870998|gb|DT020053.1|DT020053
EST:     TTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: TTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|33404396|gb|CF210023.1|CF210023
EST:     AATAGTGGCCGAGCTGTG                         ACCCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|77584551|gb|DV221351.1|DV221351
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110723355|gb|EE100569.1|EE100569
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|34542824|gb|CF511056.1|CF511056
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110403350|gb|EC964913.1|EC964913
EST:     AATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110684987|gb|EE062894.1|EE062894
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|71868322|gb|DT017377.1|DT017377
EST:     GCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: GCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110700293|gb|EE078169.1|EE078169
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|351034398|gb|FQ463211.1|FQ463211
EST:     CCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: CCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|30302625|gb|CB979419.1|CB979419
EST:     AGGCTGCAACTTCAATTTTGGAGGATTCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110370513|gb|EC929889.1|EC929889
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110369587|gb|EC933751.1|EC933751
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|71876560|gb|DT025615.1|DT025615
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110417405|gb|EC983457.1|EC983457
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110698628|gb|EE076342.1|EE076342
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGCGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110392232|gb|EC957503.1|EC957503
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|30302691|gb|CB979485.1|CB979485
EST:     AGGCTGCAACTTCAATTTTGGAGGATTCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|71867581|gb|DT016636.1|DT016636
EST:     TTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: TTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110715680|gb|EE094009.1|EE094009
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|37186504|gb|CF605857.1|CF605857
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGT
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGT
EST: gi|161710974|gb|FC060329.1|FC060329
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110731667|gb|EE106277.1|EE106277
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|30125681|gb|CB911020.1|CB911020
EST:     CAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: CAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110733214|gb|EE109211.1|EE109211
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110399184|gb|EC965678.1|EC965678
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|110716881|gb|EE092249.1|EE092249
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|34546224|gb|CF514456.1|CF514456
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCGTCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
EST: gi|33404309|gb|CF209936.1|CF209936
EST:     AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTG                         AACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC
genomic: AGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttg ... tctttggcagAACCTAGCTGGACGCAAAGAACAGTCAGCACTCCGGGCTGTCATCAAGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGTTTCCCCCTGTACCCTTGCTGAAGGCTTTTCTGAGAGATTCAAAGAAGGCTGCAACTTCAATTTTGGAGGATCCCAACAATAGTGGCCGAGCTGTGgtatgtcttgcatccatccatcctgaatgatattctttgttgtgtccattcttataagcaaggtctacatgaatttatggaactggatttccttcttatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagcaa