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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAGAAGAGGGACCCACGCACAGTGGTGGCAGTTATTCTTGGTGGAGGGGCTGGTACCCGCCTTTTCCCCCTCACCAAACGCCGGGCCAAGCCTGCTgtaagtccactttggaagcaatgtggggcatttttttttatacagattccaataggtttataatttagaaaatgggtgtattgtag

Basic information

species Vitis vinifera
transcript Vv05s0020g02880.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 2
GATGGAGAAGAGGGACCCACGCACAGTGGTGGCAGTTATTCTTGGTGGAGGGGCTGGTACCCGCCTTTTCCCCCTCACCAAACGCCGGGCCAAGCCTGCTgtaagtccactttggaagcaatgtggggcatttttttttatacagattccaataggttta---taatttagaaaatgggtgtattgtag------------
 ||||| |  ||| ||||| | |||||| |||||||||| || |||||||| ||||| ||||| || ||||| ||||| || || || ||||| ||||||||||||    |||       || |    |||| ||  ||||  | ||     |   | ||   |  |||      |   | || |||              
TATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTCACTAAGCGACGAGCCAAACCTGCTgtaagtttctttttccttttattttac-cattcttagttatgaacataatggtgcctataacttggtttccctcttaaatttactgtttactttttaatac

upper sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G38820.2 (Glycine max), 5'ss of exon 2
GATGGAGAAGAGGGACCCACGCACAGTGGTGGCAGTTATTCTTGGTGGAGGGGCTGGTACCCGCCTTTTCCCCCTCACCAAACGCCGGGCCAAGCCTGCTgtaagtccactttggaagcaatgtggggcatttttttttatacagattccaataggtttataat-----ttagaaaatgggtgtattgtag-----------
 ||||| |  ||| ||||| | |||||| |||||||||| || |||||||| ||||| ||||| || ||||| || || || || || ||||| ||||||||||||    |||      | | |    |||| | ||   ||    ||| | ||     |||||      || ||  ||| |    | ||            
TATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTgtaagtttcttttccttttattttac--cattctcttgattattctttcaattataaacataatggtgcctataacttggttaccctctaaaatttactttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373811|gb|EC938181.1|EC938181
EST:     GGGCTGGTACCCGCCTTTTCCCCCTCACCAAACGCCGGGCCAAGCCTGCT                         GTCCCGATTGGAGGGTCATATAGGCTGATTGATGTGCCAATGAGCAACTGC
genomic: GGGCTGGTACCCGCCTTTTCCCCCTCACCAAACGCCGGGCCAAGCCTGCTgtaagtccac ... tgtattgtagGTCCCGATTGGAGGGTCATATAGGCTGATTGATGTGCCAATGAGCAACTGC