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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTTAAAGGACTTGGCTTTGTCGGGTTTCAAGAACCTCGAAGTCATAGATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttttttcttttttctttttaaatttcttaatgatttctggttattgggttttaatttgattccgaattcattgctgggtttagttctaattcg...

Basic information

species Vitis vinifera
transcript Vv05s0020g02820.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G19180.1 (Arabidopsis thaliana), 5'ss of exon 2
AACTGTTAAAGGACTTGGCTTTGTCGGGTTTCAAGAACCTCGAAGTCATAGATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttctttt-ttcttttttctttttaaatttctta--atgatttctggttattgggttt----------taatttgattccgaattcattgctgggtttagttctaattcg-----------------------
| ||  | ||||| || ||| | || |||||    || |||||||| || |||||||||||||| |||||| ||||||| ||||| |||||||| ||||||||||| | |  ||||||| ||| |||   |||   |  || |   ||    |||  |||           |  | || ||  ||| |  ||       || ||   ||||                         
AGCTTCTCAAGGATTTAGCTCTTTCTGGTTTTCGTAATCTCGAAGTGATTGATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttctccttcttttgtctctttggttttaccactataaaccctatccattatgttccctgtgtgtgtggtatgtttgtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712941|gb|EE088425.1|EE088425
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|30300928|gb|CB977722.1|CB977722
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110711880|gb|EE088865.1|EE088865
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110720200|gb|EE095912.1|EE095912
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110718368|gb|EE095121.1|EE095121
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110711482|gb|EE088011.1|EE088011
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110709674|gb|EE085351.1|EE085351
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110712191|gb|EE089528.1|EE089528
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110694070|gb|EE070853.1|EE070853
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110713830|gb|EE090092.1|EE090092
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|161719612|gb|FC064545.1|FC064545
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
EST: gi|110711335|gb|EE087704.1|EE087704
EST:     GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGCTCCTCTTCAG                         GCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT
genomic: GATATGGACCGTATCGAGGTTTCTAATCTTAATCGGCAGTTCCTCTTCAGgtttttcttt ... ccaaatgtagGCTTCAAGACGTTGGAAAGCCAAAAGCTGAGGTGGCAGCAAAGCGTGTTAT