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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaacataattttgatttttctgcaaggttttcgggttggttgatttttctaaatcatgatatgtaattgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g01480.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858718|gb|DT007773.1|DT007773
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|30126267|gb|CB911606.1|CB911606
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110372840|gb|EC937034.1|EC937034
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|30130090|gb|CB915429.1|CB915429
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|30298272|gb|CB975066.1|CB975066
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110722148|gb|EE098126.1|EE098126
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|32245894|gb|CD711713.1|CD711713
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110369147|gb|EC933294.1|EC933294
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110412369|gb|EC978117.1|EC978117
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110697003|gb|EE073611.1|EE073611
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|87586305|gb|DY474625.1|DY474625
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110419134|gb|EC985336.1|EC985336
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110428108|gb|EC994569.1|EC994569
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110696043|gb|EE074748.1|EE074748
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110696798|gb|EE073240.1|EE073240
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110408368|gb|EC974003.1|EC974003
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|34415890|gb|CF414644.1|CF414644
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|71872553|gb|DT021608.1|DT021608
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110365138|gb|EC928915.1|EC928915
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGTTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110377318|gb|EC942384.1|EC942384
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110695069|gb|EE072662.1|EE072662
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|27582593|gb|CB005288.1|CB005288
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110381610|gb|EC934920.1|EC934920
EST:     ATGCACAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110389889|gb|EC954762.1|EC954762
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|27584673|gb|CB007368.1|CB007368
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110688561|gb|EE067257.1|EE067257
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|110694167|gb|EE071034.1|EE071034
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
EST: gi|71882407|gb|DT031462.1|DT031462
EST:     ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATG                         TTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT
genomic: ATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaac ... gtaattgcagTTCTGCCACAAATAGGCTAATTACTTCAAAGGACCATGCATCTGTTCAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCGGTGTAGTCGCAAACACAAGGCAAAATGCAGAACGAAGAGGGTCAAAACATGGATCTGTACATCCCCAGGAAATGgtatttgaacataattttgatttttctgcaaggttttcgggttggttgatttttctaaatcatgatatgtaattgcag

- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA