Sequence
atgc intronic sequence ATGC exonic sequenceTATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGgtttgtgaagcaaaccaaagttttatctgtgtgcactcaacatatgtcactatggcactatggcacttcctttattgttatcatttgttcattttttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G160569_T02 (Zea mays), 5'ss of exon 2
TATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGgtttgtgaagcaaaccaaagttt-tatctgtgtgcactcaacatatgtcactatggcactatggcacttcctttattgttat-catttgttcattttttttt---
| ||| ||||||||| ||||| ||||||||||||||| | || | ||| ||||| ||||| ||||||||| | || | ||||| | | | || || | || || | ||| ||| || || |||| | |||||||||| | | ||| | ||| ||
TGTGCTTGGATGGAAGCTTACCAGGTTACCACCTCCACAGAGGGTTTGGATCAGGAGCAAACAGTTGGCTCGTCAATCTCGAGgt--gaggaacaccacatatttcgcataggcgtggggtca-cagataaacttatgaaa--atggcacttcgtatgttgcactatgccagttagggttagggcatg
upper sequence: Vv05s0020g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G04770.1 (Glycine max), 5'ss of exon 2
TATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGgtttgtgaagcaaaccaaagttttatctgtgtgcactcaacatatgtcactatggcactatggcacttcctttattgttatcatttgttcattttttttt--
| |||||||||||| | ||||| || |||||| ||||||| |||||||| ||||| |||| ||||||||||| || |||||||| ||||| | | || ||| | || || ||| | | | ||| |||| | | || || | | ||||| || ||||||
TCTGCCTGGATGGATCTTTACCGGGGTACCACTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGgtatgtgagactc-ctgaactttgaactaagttcaccaatgacgggacacaatggttgttttcttgttacta-actacaatcatccctttcagttttttggt
upper sequence: Vv05s0020g01110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G17740.1 (Glycine max), 5'ss of exon 2
TATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGgtttgtgaagcaaaccaaagttttatctgtgtgcactcaacatatgtcactatggcactatggcacttcct--ttattgttatcatt-tgttcattttttttt
| |||||||||||| | ||||| || ||||| ||||||| |||||||| ||||| |||| ||||||||||| || |||||||| ||||| | | |||||| | | || ||| | || | ||| |||| | | || | || ||||| | |||| ||||||
TTTGCCTGGATGGATCTTTACCGGGGTACCATTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGgtatgtgagactc-ctgaagtttgaattaagttcaccaatgatgggacacgatggttgttttcttgttaataactacaacaatcatccttttcagtttttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110376388|gb|EC941450.1|EC941450EST: TCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAG GGTGGAGGATGGTGCAATACAATTAGAACTTGTGTTTTCCGGNNNNNNNCT
genomic: TCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGgtttgtgaag ... ttggtggcagGGTGGAGGATGGTGCAATACAATTAGAACTTGTGTTTTCCGGAAAAAAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGCCTGGATGGAACATTACCTGGTTACCACCTCCACCGGGGATATGGGTCAGGGGCAAATAGTTGGCTCATTCATTTGGAGgtttgtgaagcaaaccaaagttttatctgtgtgcactcaacatatgtcactatggcactatggcacttcctttattgttatcatttgttcattttttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaaa