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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAGTGGCATTCATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagtttttggtgatcctttcttctgtatgtttacaaataattattccatctctctgctaacattcgtccactccttatggatttaag

Basic information

species Vitis vinifera
transcript Vv04s0044g01840.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G36040.1 (Glycine max), 5'ss of exon 2
AGCAAGTGGCATTCATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagtttttggtgatcctttc----ttctgta-tgtttacaaataa--ttattccatctctct-----gctaacattc--gtccactccttatggatttaag--------
||||    ||||| ||||| ||||| ||||| |||||| |||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |||| |   ||||| |||     |||| || | |||| | || |  | | | ||    |||     | || || ||  | | | | ||||   |||   |        
AGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTCTATGGAGAAGGATTAAATTGCCTTAAgtgagttatgcatgatcattttaactttctctaatatttaaatatgacataaatacacaattctaaaatgttatcactctggcctaatgcttaattattggtgaatataag

upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G09370.2 (Glycine max), 5'ss of exon 2
AGCAAGTGGCATTCATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagtttttggtgatccttt---cttctgtatgtttacaaata----attattccatctctct-----gctaacattc--gtccactccttatggatttaag--------
| ||    ||||| ||||| ||||| ||||| |||||| |||| ||||||||||||||||| ||||| |||||||| || |||||| ||||||||||||||| |||| |   ||||| |||   |||     | | |  |||||    || | | ||    |||     | || || ||  ||| | | ||||   ||| | |        
AACAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTCTACGGAGAAGGACTAAATTGCCTTAAgtgagttatgcatgatcatttaaactttctcttatctttaaatatgacataaatacacaattctaaaatgttatcactctggtctaatgcttaattattgatgaatataag

upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G32820.1 (Glycine max), 5'ss of exon 1
AGCAAGTGGCATTCATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagtttt------tggtgatcctttcttctgtatgtttaca---aataattattccat-ctctctgctaac--attcgtcc-actcctta------tggatttaag
|||||   || || ||||| ||||| |||||||||||| |||| ||||||||||||||||| || || || ||||||   || |   | ||||||||||||| |||| |      | || |   |||||||| | | |  | |   || || ||  |||  ||||    |||    ||| ||| | | ||||      ||||| ||||
AGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAgtgagttatacctgtttgttaagttttcttctatgtttaaatatggaacaaatacaccaaactctgaaataatcacttcatcctaatacttaattggctggatataag

upper sequence: Vv04s0044g01840.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G21840.1 (Glycine max), 5'ss of exon 3
AGCAAGTGGCATTCATGAAAGAGCTGGAAAATTTCTTTCGGGAAAGGAGCATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagtttt------tggtgatcctttcttctgtatgtttaca---aataattattccat-ctctctgctaac--attcgtcc-actcctta------tggatttaag
|||||   || || ||||| ||||| |||||||||||| |||| ||||||||||||||||| || || || ||||||   || |   | ||||||||||||| |||| |      | |  |   |||||||| | | |  | |   || || ||  |||  ||||    |||    ||| ||| | | ||||      ||||| ||||
AGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAgtgagttatacccgtttgctaagttttcttctatgtttaaatatggaacaaatacaccaaactctgaaataatcacttcatcctaatacttaattggctggatataag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248497|gb|CD714316.1|CD714316
EST:     ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAA                         ATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
genomic: ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagttttt ... tggatttaagATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
EST: gi|32249759|gb|CD715578.1|CD715578
EST:     ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAA                         ATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
genomic: ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagttttt ... tggatttaagATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
EST: gi|32247711|gb|CD713530.1|CD713530
EST:     ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAA                         ATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
genomic: ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagttttt ... tggatttaagATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
EST: gi|110688872|gb|EE067920.1|EE067920
EST:     ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAA                         ATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG
genomic: ATGGAATTCAAGCCTCCTAAATTCTATGGTGAAGGATTAAATTGCCTTAAgtaagttttt ... tggatttaagATTATGGAGAGCGGTGACTAGATTGGGTGGCTATGACAAG