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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgtattacaatgatgactgtataactgattttcttccgttttgttggtgcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01410.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G39370.5 (Glycine max), 5'ss of exon 2
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgta----ttacaatgatgactgtataactgattttcttccgttttgttggtgcag--------------------------------------------------
||| |  |||||||||||||| ||||||||||| ||  |||| || |  |||||||||||||||||||||||||| ||||| ||||| |||||  |||| ||  | | |   |||| |  || |   ||   ||| || | |  ||    || || |      | | ||| | | |   |  | |  ||||| |                                                      
TACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGgtctagctccacctctga--tatttcacttgctttcccaaatcctaactcttgcacttgcctttttctaattcagtaattctcatgctgttgttcttttttcttcttttttttttctccttttcgtttctgggtttttatctacgcag

upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G39370.1 (Glycine max), 5'ss of exon 2
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgta----ttacaatgatgactgtataactgattttcttccgttttgttggtgcag------------------------------------------------------
||| |  |||||||||||||| ||||||||||| ||  |||| || |  |||||||||||||||||||||||||| ||||| ||||| |||||  |||| ||  | | |   |||| |  || |   ||   ||| || | |  ||    || || |      | | ||| | | |   |  | |  ||||| |                                                          
TACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGgtctagctccacctctga--tatttcacttgctttcccaaatcctaactcttgcacttgcctttttctaattcagtaattctcatgctgttgttcttttttcttcttttttttttctccttttcgtttctgggtttttatctacgcagaaag

upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G15540.1 (Glycine max), 5'ss of exon 2
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactct-------caactaatgtcctctgttttcccagttg-tattacaatgat--gactgtataactgattttc-ttccgttttgttggtgcag-----------------------------
||| |  |||||||||||||| ||||||||||| ||  |||| || |  |||||||||||||||||||||||||| ||||| ||||| |||||  |||| ||  | | |   ||||       ||  |  | |||    || |  |  ||| | || |  |  |   | |   ||| | ||| || | | ||| |  |  ||                                
TACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGgtctagctctacctctgatatttcacttgctttcccaaattctaactcttgctcttgcctttttctaattcagtaattaattctcatgctgttgtacttttgggctggtcgtttctgggattttatttacgcag

upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G64040.2 (Arabidopsis thaliana), 5'ss of exon 2
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgtatt-acaatgatgactgtataactgattttcttccgttttgttggtgcag----
 ||||| |||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||| |||||| |||| ||    |  |||  | ||||   | | || |  |||   | |  |||| |   ||| ||   | | | || | || |||  |||   |  |||||    
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaac--gttttcttttctttgggaataatatttaacttgaagagattgtga-tgttcttgttcgttttctgttttgcagaaag

upper sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G64040.1 (Arabidopsis thaliana), 5'ss of exon 2
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgtattacaat-gatgactgtataactgattttcttccgttttgttggtgcag
 ||||| |||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||| |||||| |||| ||    |  |||  | ||||   | | || |  |||   | |  ||||  | | || ||   | | | || | || |||  |||   |  |||||
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaac--gttttcttttctttgggaataatatttaacttgaagagattgtga-tgttcttgttcgttttctgttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110425478|gb|EC991863.1|EC991863
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|51990033|gb|CV179488.1|CV179488
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71868320|gb|DT017375.1|DT017375
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|51050288|gb|CO818473.1|CO818473
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71876102|gb|DT025157.1|DT025157
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110423571|gb|EC989918.1|EC989918
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|34415917|gb|CF414671.1|CF414671
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110390553|gb|EC955470.1|EC955470
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110423324|gb|EC989667.1|EC989667
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71867548|gb|DT016603.1|DT016603
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110690623|gb|EE067883.1|EE067883
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110732878|gb|EE108551.1|EE108551
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71890517|gb|DT039572.1|DT039572
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|32269256|gb|CD718415.1|CD718415
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|77582659|gb|DV220317.1|DV220317
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71873213|gb|DT022268.1|DT022268
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110383651|gb|EC948034.1|EC948034
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110684898|gb|EE062701.1|EE062701
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110395827|gb|EC961500.1|EC961500
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|77584625|gb|DV221396.1|DV221396
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110689671|gb|EE066098.1|EE066098
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110404140|gb|EC970159.1|EC970159
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110375764|gb|EC940779.1|EC940779
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110383661|gb|EC948044.1|EC948044
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71875760|gb|DT024815.1|DT024815
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|34416201|gb|CF414955.1|CF414955
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110694019|gb|EE070760.1|EE070760
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110378137|gb|EC943256.1|EC943256
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110701910|gb|EE080018.1|EE080018
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71876090|gb|DT025145.1|DT025145
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|34320189|gb|CF372943.1|CF372943
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71866464|gb|DT015519.1|DT015519
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|46917592|gb|CN546921.1|CN546921
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110690643|gb|EE067984.1|EE067984
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110687379|gb|EE064736.1|EE064736
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110395900|gb|EC961574.1|EC961574
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110390909|gb|EC955852.1|EC955852
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71872385|gb|DT021440.1|DT021440
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71870597|gb|DT019652.1|DT019652
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110688158|gb|EE066390.1|EE066390
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110729584|gb|EE105684.1|EE105684
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110384002|gb|EC948413.1|EC948413
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110694411|gb|EE071495.1|EE071495
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110375702|gb|EC940713.1|EC940713
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|71867631|gb|DT016686.1|DT016686
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110389918|gb|EC954792.1|EC954792
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110692541|gb|EE071907.1|EE071907
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110369476|gb|EC933636.1|EC933636
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|77582629|gb|DV220302.1|DV220302
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110692402|gb|EE071608.1|EE071608
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110377094|gb|EC942155.1|EC942155
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|77585512|gb|DV221841.1|DV221841
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110421368|gb|EC987664.1|EC987664
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
EST: gi|110361624|gb|EC925110.1|EC925110
EST:     GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGNNNNNN                         NNNGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC
genomic: GCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaaccca ... gttggtgcagAAAGTGCCTTTCCTTTCTGAAGATCTAGAGTTGGAGTGTGAAGGAAGGGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgtattacaatgatgactgtataactgattttcttccgttttgttggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA