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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTCCTGGAATTCTGCTCTGGGGGAGATCTAGAGTCTTACATTCGGCACCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGgtagttccttattcgagtcacaattgacaatggttctactactattccctcactgttctgaaaacgtgtctaaagaatgtgttgatatctgtcttgtag

Basic information

species Vitis vinifera
transcript Vv04s0044g00630.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855263|gb|DT004318.1|DT004318
EST:     CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAAATTCATGCGGCGGCTTG                         GAGCGGGTTTAGAAGTGCTACACTCCCACCA-ACTCATACACCGAGGACTT
genomic: CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGgtagttcctt ... tgtcttgtagGAGCGGGTTTAGAAGTGCTACACTCCCACCACA-TCATTCACCGAG-ACTT
EST: gi|110711174|gb|EE087403.1|EE087403
EST:     CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTG                         GAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGA
genomic: CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGgtagttcctt ... tgtcttgtagGAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGA
EST: gi|27584714|gb|CB007409.1|CB007409
EST:     CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTG                         GAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGA
genomic: CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGgtagttcctt ... tgtcttgtagGAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGA
EST: gi|349822297|gb|FQ412561.1|FQ412561
EST:     CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTG                         GAGCGGGTTTAGAAGTGCTACGCTCCCACCACATCATTCACCGAGACTTGA
genomic: CCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGgtagttcctt ... tgtcttgtagGAGCGGGTTTAGAAGTGCTACACTCCCACCACATCATTCACCGAGACTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGTCCTGGAATTCTGCTCTGGGGGAGATCTAGAGTCTTACATTCGGCACCATGGGAGAGTTCAAGAATGGGTTGCCAGAAGATTCATGCAGCAGCTTGgtagttccttattcgagtcacaattgacaatggttctactactattccctcactgttctgaaaacgtgtctaaagaatgtgttgatatctgtcttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT