Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcgtgatatttttcttagtttttcaatggaaatctagtgaacaaagttgttgcatgtgccatttggttagatctgttggaagctttgagtttc...

Basic information

species Vitis vinifera
transcript Vv04s0043g00440.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G078985_T02 (Zea mays), 5'ss of exon 1
CTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcgtgatatttttcttagtttttcaatggaaatctagtgaacaaagttgttgcatgtgccatttggttaga-tctgttggaagctttgagtttc
  |||||   |      |  |   |   ||| ||   || |  ||| ||   |    ||  |||||||||||||||||||||| ||||||||| ||||||||   |  ||      | |||  |  |   |   |      |  | | | | | |  ||   |   || | | ||| | ||   |||||    |       
GAAACAGCACATCGCTCTCTCGATCTCAGCCATGGCGGAGGTGGAGCAGCCCCAGGACGCGGTGAAGCTCTTCAACCGCTGGACCTTCGACGATGTCCAGgt---acgcgaatggctcttcacatctccacttcgatcgattctttagccatgctactgtgag---cagtggattaaactccaatggaaaaaatctacag-

upper sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 1
CTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcgtgatatttttcttagtttttcaatggaaatctagtgaacaaagttgttgcatgtgccatttggttagatctgttggaagctttgagtttc
    |||   |      |  |   |   ||| ||   || |  ||| || | |    |     |||||||||||||||||||| |||||| || ||||||||      || || |    |||| |  | ||        || | |    |   |||  ||   |  || | | |   | |       |  | ||      
GCCGCAGCACATCGCTCTCTCGATCTCAGCCATGGCGGAGGTGGAGCAGCAACAGGACACGCCGAAGCTCTTCAACCGCTGGACCTTCGATGATGTCCAGgta-----cgcga-acgagtcttcgcatctctgcatgcttcgattctttagccttgccgctactagcagtggatggaaccgacgatgaaatctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71876249|gb|DT025304.1|DT025304
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|77586506|gb|DV222369.1|DV222369
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|77581200|gb|DV219528.1|DV219528
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71890464|gb|DT039519.1|DT039519
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110422670|gb|EC988997.1|EC988997
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71867505|gb|DT016560.1|DT016560
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71867269|gb|DT016324.1|DT016324
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110688433|gb|EE066977.1|EE066977
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110418494|gb|EC984652.1|EC984652
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110375762|gb|EC940777.1|EC940777
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71867000|gb|DT016055.1|DT016055
EST:     CGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTG-ATCCCAGCTAAGCA
genomic: CGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAAT-CCAGCTAAGCA
EST: gi|110690239|gb|EE067163.1|EE067163
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71867499|gb|DT016554.1|DT016554
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71875879|gb|DT024934.1|DT024934
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71872036|gb|DT021091.1|DT021091
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71870766|gb|DT019821.1|DT019821
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71867409|gb|DT016464.1|DT016464
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|77580785|gb|DV219300.1|DV219300
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110375233|gb|EC940198.1|EC940198
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110387551|gb|EC952229.1|EC952229
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110384661|gb|EC949115.1|EC949115
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110716285|gb|EE091135.1|EE091135
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|77577781|gb|DV217640.1|DV217640
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|351017700|gb|FQ436053.1|FQ436053
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110726592|gb|EE102508.1|EE102508
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|32247513|gb|CD713332.1|CD713332
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71873340|gb|DT022395.1|DT022395
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71874207|gb|DT023262.1|DT023262
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110388834|gb|EC953627.1|EC953627
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|18459303|gb|BM437581.1|BM437581
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|161713745|gb|FC064335.1|FC064335
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110701573|gb|EE079297.1|EE079297
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110420725|gb|EC987005.1|EC987005
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110360703|gb|EC924020.1|EC924020
EST:     ACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: ACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71875878|gb|DT024933.1|DT024933
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110387825|gb|EC952523.1|EC952523
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110687256|gb|EE064507.1|EE064507
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71872644|gb|DT021699.1|DT021699
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|77581790|gb|DV219850.1|DV219850
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|71873248|gb|DT022303.1|DT022303
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|110689837|gb|EE066411.1|EE066411
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
EST: gi|77583662|gb|DV220862.1|DV220862
EST:     AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAG                         ATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT
genomic: AGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcg ... tttcatacagATTGGAGACATGTCTTTGCTGGACTACGTCGCTGTGAATCCAGCTAAGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAACAGAGGAGGAGAATGGCAGCCATTGCCGTGATTGACGATGAGAAGAAGCCCACCGAAGTGAAGCTCTTCAACCGCTGGAGCTTCGACGAAGTCCAGgttgaaatcgtgatatttttcttagtttttcaatggaaatctagtgaacaaagttgttgcatgtgccatttggttagatctgttggaagctttgagtttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaa