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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaattttggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttccatgttttcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03830.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G049141_T02 (Zea mays), 5'ss of exon 2
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaattttggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttccatgttttcag--------------------------------------------------------------------------------------------
||| || || ||||||| |||||| || ||||| || |||||||| ||||| ||||||||||| || || |  |||||||| ||| | ||||||||||||||||    |   ||   || |       | |||  |      | ||  |    | |  |    ||| |     || |||||   |||  ||                                                                                               
TCTTAAAAAAATATCCCTGGAGCATCCAACTGCGTGCTTGCGAGCTGGTGCACTAATGGCAGTCCTATCATACCTTGACTTTTTCTCCACAGGTGTTCAGgtaatcactct-ctgcctattatagacttttgcatcacaaaatactttgtttgtttcagctcatttatctcatagcttattcttatgcattacttgtcattatattgtgacagatgaactgtattatttattcttgttatttatttttattactaactgttgtttttgttgatggaatgttttcag

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G374574_T02 (Zea mays), 5'ss of exon 3
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaatttt---ggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttccatgttttcag
 || |||||||| || | |||||| || ||||||||||||||||| ||||| |||||||| || || || | ||| ||||||||| | || || ||||||||    |  |     ||  ||||     | ||   ||  |      | ||   | |  |     | || |    |  |   |  | | |||| |   
CCTTAAGAAGATCTCTCTGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCCCTAATGGCTGTTCTATCGTATCTCGACTTCTTCTCCACTGGGGTTCAGgtcgggtcctctgatctccttacaaccgttcttatcttgtgcactgtttgcatctacttacacctcttcccatggggg---acgtacttgttgtag-

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G03640.1 (Glycine max), 5'ss of exon 2
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaattttggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttcca-tgttttcag------------------------------------
||||||||||||||| |||||||| || ||||||||  | |||||||||||||| ||||| |||||||| | | | ||||||||  ||||||| ||||||||||| | |  |  |  |||    ||   | |     | |  | |    |     || |||   |  | ||  | ||     |   ||   | ||                                    
TCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctacatttagaggatgattgcatcccactggtccttttggacagtcataaatcatttggccacaggtgccattagtgagcaagtgtatgttgacattattctttgtttcag

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G11490.2 (Glycine max), 5'ss of exon 2
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaaaattttggctatttactcgtatgctgtgctccttggtcttctggggccatattgggatttttctgaagaagtttatttcc-atgttttcag----------------------------------------
| |||||||||| || | |||||| || ||||||||  | |||||||||||||| ||||| |||||||||| | | ||||||||  ||||||| ||||||||||| | |  |  |  |||    ||   | |     |  | || |  || | | |||| ||  |  | ||  | ||     |  |||  || ||                                        
TTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGgtaaattgtcagtgaagtacctaaatttagaggatgattatattatatggtccttttgg-atagtcataaatcatttggccacagatgcctttagtgagcaagtgtgtgtatgttgacattattctttgtttcag

upper sequence: Vv04s0023g03830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 2
TCTGAAGAAGATATCCCAGGAGCAGCCTACTGCCTGTTTGCGAGCAGGTGCTCTAATGGCAGTGCTTTCTTTTCTTGACTTCTTCCCAACAGGTGTTCAGgtaa--aattttggctatttactcgtatgctgtgctccttggtct-tctggggc-catattggg-atttttctgaagaagtttatttccatgttttcag
||| || |||||||| |||||||| || ||||||||||||||||| |||||||| ||||| ||||| || | ||| || |||||| | || |||||||||||    || |||     ||  ||  ||||||   ||   | || | |||   || ||| ||       ||  || ||                      
TCTCAAAAAGATATCTCAGGAGCACCCAACTGCCTGTTTGCGAGCTGGTGCTCTTATGGCTGTGCTCTCGTATCTGGATTTCTTCTCCACTGGTGTTCAGgtgggtaaatttctaacttctcttttatgctacacttactcgtgtatctaatgcacatgttacttggcttcttgtag----------------------