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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAATTCTACTGTTGAAATAACAACAGCCCAGGTTAAGCTGTCAGAGTATGTAATCAAACGGTATAGCAAACCCACTACTCAAGCACAACAAGTTGAGgttgattacttagccattcttctgttaaaattgttattcctcaatattttctggtctgttgggcaatagtgttcattaacattttgattctgactctgagcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03680.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G05220.1 (Glycine max), 5'ss of exon 2
CTTGAATTCTACTGTTGAAATAACAACAGCCCAGGTTAAGCTGTCAGAGTATGTAATCAAACGGTATAGCAAACCCACTACTCAAGCACAACAAGTTGAGgttga-ttacttagccattcttct-gttaaaattgttattcctcaatattttctggtctgttgggcaatagtgttcattaacattttgattctgactctgagcag
 ||||||||||||| |||||| ||||| || ||||||||||||||  ||||||| |||| |    | | |||     | ||||||||| | |||||||||||||| ||   |    ||| || |  ||     |  | || || | ||| ||||  | |||| |     |    | |  |                         
TTTGAATTCTACTGCTGAAATTACAACTGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAAACACACCAACTTTGCCACTCAAGCAGACCAAGTTGAGgttgagttgactgttaatttttttcattgtttatactcttgctaattatattct--tatgtttgattccaactcttaccag------------------------