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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGgtgggtttcttctttccgatctctctctttgtttacttatttattttttctttctcaactggtttaaattttgttgttctttggttcaaatttttcattctttgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03340.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g10560.1 (Oryza sativa), 5'ss of exon 2
ATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGgtgggtttcttctttccgatctctctctttgtt--tacttattt-attttttctttctcaactggtttaaattttgttgttctttggttcaaatttttcattctttgcag
||||| |||||  || |||||||  ||||||| ||||| ||  | |||||||||||||| ||  ||||||| || ||||| ||||||||||| ||||||||| |     ||   |  |      ||  | ||    ||  ||  |||| |   |  ||| |||| |    |||| ||| ||   |                        
ATCCGGTTCATCCTGCTGCAGAATCGGCAGGGGAAGACGCGGCTGGCCAAGTACTACGTCCCGCTCGAGGACTCGGAGAAGCACAAGGTCGAGTACGAGgtgagggggatccagcaaaggagattccatcttggcgctggttcgatttgtgggtgttcatctgggtc---ttttcttggtcgcag------------------------

upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC195874.2_FGT002 (Zea mays), 5'ss of exon 2
ATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGgtgggtttcttctttccgatctctctctttgtttacttatttattttttctttctcaactggtttaaattttgttgttctttggttcaaatttttcattctttgcag
||||| |||||  || |||||||| ||||||| ||||||||| | |||||||| ||||| ||  ||||||| || || || |||||||| |||||||||||  |   | |    |  |||  |     || ||      |   || ||  || ||     |||    |||     ||  ||| ||    || ||  |  |||||||
ATCCGCTTCATCCTGCTGCAGAACCGGCAGGGGAAGACTCGACTGGCCAAGTATTACGTCCCGCTCGAGGACTCGGAAAAGCACAAGGTTGAATACGAGgtaagagacgta---cgaatcagtggtgctggtt--cggctcggttcttgattttct----gttctgttttctccttttcttgatttggtttcttgctggtttgcag

upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 2
ATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGgtgggtttcttctttccgatctctctctttgtttacttatttattttttctttctcaactggtttaaattttgttgttctttggttcaaatttttcattctttgcag-
|||||||||||  ||||||||||||||||||| ||||| ||  | ||||| |||||||||||| ||||||| || ||||| ||||||||||||||||||||     | |  | | |  || | |  |||   | ||| || |      |     || ||      |||||||  | | |   |||       || | |  |   || 
ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGACTCCGAGAAGCACAAGGTCGAATACGAGGtaacaatttcgtcttccttcccacgatttcacttcttcttcacaca--caacagcaccttaacctaattttggagatataatgttgg-----tttagtgatgaaagg

upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G40430.1 (Glycine max), 5'ss of exon 2
ATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGgtgggtttcttctttccgatctctctctttgtttacttatttattttttctttctcaactggtttaaattttgttgttctttggttcaaatttttcattctttgcag
|||||||||||  ||||||||||||||||||| ||||| ||  | ||||| |||||||||||| ||||||| || ||||| |||||||| |||||||||||     |  |  |||     |   || |     ||      |  ||  | |  |     |   |||  || ||  | |    |   | |      |    | || |
ATCCGATTCATTCTGTTGCAGAACAGGCAGGGCAAGACCCGTCTTGCCAAATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTGGAATACGAGgtaacaattctacttc-----ttcttcatacacaacaccaccaccttaacctaattgga-gacataaggttcgtc-tacgggagaagagaaggggaagagatcgcgg

upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G47830.1 (Arabidopsis thaliana), 5'ss of exon 2
ATCCGATTCATATTGTTGCAGAACAGGCAGGGAAAGACTCGATTAGCCAAGTACTACGTTCCTTTCGAGGAATCTGAGAAACACAAGGTCGAATACGAGgtgggtttcttctttccgatctctctctttgtttacttatttattttttctttctcaactggtttaaattttgttgttctttggttcaaatttttcattctttgcag
|||||||||||||| ||||||||||| || || ||||||||  ||||||| ||||| || ||| |||| ||||| ||||||||||| ||||||||||||||     |  || || | |  ||| || |      |||  || |||| || || | |   |||||    ||  |  ||||||   ||| |                 
ATCCGATTCATATTATTGCAGAACAGACAAGGTAAGACTCGTCTAGCCAAATACTATGTCCCTCTCGAAGAATCCGAGAAACACAAAGTCGAATACGAGgta---ctactcatttcaaattctatcat------cttcctttttttatccttttta---ggtttctgattcttaattcttt---tcacag----------------