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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTCTGGTCTAGTCATGATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctcatgacctggagcaacatcttctagttcattttaaaagtcatacttacccaatgaaccgatctatgtctatag

Basic information

species Vitis vinifera
transcript Vv04s0023g03200.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G05550.1 (Glycine max), 5'ss of exon 2
CCAGGCTGATTACTTTCAGGCAACTTTTAGAGGTTTTCTGGTCTAGTCATGATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaa------ctctcatgacctggagcaacatcttctagt------tcattttaaaagtcatacttacc-caatgaaccgatctatgtctatag--------
|   ||||||||  || ||| ||||  | || || || ||||| ||||||||| ||||||| || | ||| ||||| |||||||||||||| || || |||||       | || ||| ||     |||  |||| |  |      |||| |  |   |||| || ||  | ||| || || ||||  |||||         
CACAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCATGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGgtaggaggagcactgatg-ccaaccacaatttcttgtgatcttccttcatatccagcctcatgctgactgctatgtactgaactatacctatatgctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77582988|gb|DV220511.1|DV220511
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|110719878|gb|EE095384.1|EE095384
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|33404892|gb|CF210519.1|CF210519
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|33404977|gb|CF210604.1|CF210604
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|71875950|gb|DT025005.1|DT025005
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|71875949|gb|DT025004.1|DT025004
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|110719966|gb|EE095534.1|EE095534
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|34545817|gb|CF514049.1|CF514049
EST:     GGGCAAGGCCCTGATGTGGGTGA-TAATATAT                         GTCTATTATCTTTACTAATGGGACCGATCGA-TCGAGACTGGCTGCTGTCA
genomic: GGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGA-AGAGTTGAGACTGGCTGCTGTCA
EST: gi|161719951|gb|FC069029.1|FC069029
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|110716777|gb|EE092054.1|EE092054
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|71870654|gb|DT019709.1|DT019709
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|294966392|gb|GW839499.1|GW839499
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGA
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGA
EST: gi|161716432|gb|FC068424.1|FC068424
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|71855181|gb|DT004236.1|DT004236
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTG
EST: gi|34545903|gb|CF514135.1|CF514135
EST:     GGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|33408384|gb|CF214011.1|CF214011
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|33408641|gb|CF214268.1|CF214268
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|110718218|gb|EE094803.1|EE094803
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|161716720|gb|FC067841.1|FC067841
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|71855211|gb|DT004266.1|DT004266
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
EST: gi|30133186|gb|CB918525.1|CB918525
EST:     GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAG                         GTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG
genomic: GATTCTAGGCAGGTATTTGGGCAAGGCCCTGATGTGGGTAACCAATATAGgtaactctca ... atgtctatagGTCTATTATCTTTACTAATGGGACTGAAGAGTTGAGACTGGCTGCTGTCAG