1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTTATTGACGATATCAAGTCTGCAGTAGAGAAGGAATGCCCCCATACTGTATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttctttttgagtgtacag
species | Vitis vinifera |
transcript | Vv04s0023g02570.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|110363385|gb|EC926968.1|EC926968
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: CTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|349830006|gb|FQ420266.1|FQ420266
genomic: CTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|110378383|gb|EC943513.1|EC943513
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|352794769|gb|FQ475264.1|FQ475264
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCGTA ACTGGGGGGCCTAGCTGGAAGGTGCGC-CTGGGGAGAGGGGACTCTACAGGEST: gi|71876626|gb|DT025681.1|DT025681
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGC-CACTGGGGAGAAGGGACTCCAGAGG
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|351025527|gb|FQ435220.1|FQ435220
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|352787065|gb|FQ476098.1|FQ476098
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|110688973|gb|EE068133.1|EE068133
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|349828105|gb|FQ415433.1|FQ415433
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGTEST: gi|349828106|gb|FQ415434.1|FQ415434
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
EST: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTA ACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
genomic: TATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtatta ... gagtgtacagACTGGGGGGCCTAGCTGGGAGGTGCCACTGGGGAGAAGGGACTCCAGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTATTGACGATATCAAGTCTGCAGTAGAGAAGGAATGCCCCCATACTGTATCTTGCTCTGATATCTTGGCTATTGCTGCTAGAGACTCAAGCGTCCTAgtaagtattattatcagttgtcacatttttcagtcttgttcttgacatggcacagctaccatctttagccagcatggtgatatttacttctttttgagtgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT