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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGgtgactttttgcccttaattaaataatggtttatgatgatttagtattaaccaagaagaaagcatgtaagttagaagtttcaatcgttcatcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02280.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24800.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGgtgactttttgccctta-attaaataatggtttatgatgatttagtattaaccaagaagaaagcatgtaagttaga-agtttca---atcgt-tcatcag----------------------------------------------------------
 |   |    || ||||| ||||||||||| |||||| | ||||      |||||||||||||||||||||| ||||| || || |||||||| ||| ||||     | |     || |||   || |  | ||| |  |||     | || | |    |||  | || | ||||  ||| |||   |  || |||  ||                                                          
CTACTTCTATGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacacatatatatatatattgcttact--tctattagtattagaagtgaaactaatcaaaatta-gtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G06070.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGgtg-actt---tttgc-ccttaattaaata-----------atggtttatgatgatttagtattaaccaagaagaaagcatg-----taagttagaagttt-caatcgttcatcag----------------
 |   |  | || ||||| ||||||||||| || ||| | ||||      |||||||||||||||||||||| || ||||| || |||||||| ||| ||||  || |   | |||   |||| ||||||           |   ||  || |  ||| |||  | |    || | |  |||     ||  | | || |    ||| |||  |  |                
CTACTTCTCGGGTGTTCCCGGTTCTTTCTATGGAAGGGTTTTCCCATATCAAAGTCTTCATTTTGTCCATTCCTCATACAGCCTTCAATGGCTATCTAAGgtacacatgcatatgcatgttaactaaatatttttcttagtactattagtgtttgttttgtaggagctttcaatataatatgcgccttatatgaaaaataaataattgtttgttggtgatttaattaaatag

upper sequence: Vv04s0023g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
TTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGgtgactttttgccctta-attaaataatggtttatgatgatttagtattaaccaagaagaaagcatgtaagttaga-agtttca---atcgt-tcatcag----------------------------------------------------------
 |   |  | || ||||| ||||||||||| |||||| | ||||      |||||||||||||||||||||| ||||| || || |||||||| ||| ||||   | | |     || |||   || |  | ||| |  |||     | || |      |||  | || | ||||  ||| |||   |  || |||  ||                                                          
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttact--tctattagtattagaagtgaaactcatcaaaatta-gtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G06050.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGTTCTTTCTACGGCAGGCTCTTCCTGGGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGCTGTCTCAGgtgactttttgcccttaattaaataatggtttatgatgatttagtattaaccaagaagaaagca-tgtaagttagaagtttcaatcgttcatcag-------
 |   |    || ||||| ||||| |||||  ||||| | ||||      |||||||  ||||||||||||| ||||| ||||| |||||||| ||| |||||  |   |     |  ||   | ||   |||||   ||| | ||||   |        |    | |  ||   || ||  | |   | || |        
CTACTTCTTTGGGGTTCCCGGTTCCTTCTATAGCAGGGTTTTCCCAAATCAAAGTCTGAATTTTGTCCATTCCTCTTATAGTCTTCAATGGCTTTCTAAGgtgcatgcatatatatgtttt--tgatacattatgtaaattaaatatttttcttagttccattgctatttgtatcaatttgaatttaatgatgatgcacact