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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTAACCGGAGTTCCAGGCTCTTTCTACTGCAGGCTCTTCCCCAGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactctttgcttttaattaaaaatactggtttatgatgatttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcgtcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02240.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02240.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24800.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACTGCAGGCTCTTCCCCAGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtg---------------actctttgctttta-----attaaaaat---actggttta---tgatgatttattagtaaccaaaaagaaagcaagtga-gttagaaacttcaattgttcgtcag--------------------------------
 |   |    || ||||| || ||||||||  ||||| | ||||| |   |||||||||||||||||||||| ||||| || || |||||| | ||| ||||                | |  || ||| ||     |||| || |   |||  |  |   |  |||||||        || | | |  |  | |    ||     | | ||   ||   ||                                 
CTACTTCTATGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacacatatatatatatattgcttacttctattagtattagaagtgaaactaatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02240.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G06070.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACTGCAGGCTCTTCCCCAGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtg-actc---tttgc-ttttaattaaaaatactg---------gtttatgatgatttattagtaaccaaaaagaaagcaagtgagtta---gaaactt---caattgttcgtcag----------------
 |   |  | || ||||| || ||||||||  | ||| | |||||     |||||||||||||||||||||| || ||||| || |||||| | ||| ||||  ||     | ||| | |||| |||| ||  |           ||  || |  |||  ||| | |    || | |  | | |  |||   ||||  |    ||||||| ||  |                
CTACTTCTCGGGTGTTCCCGGTTCTTTCTATGGAAGGGTTTTCCCATATCAAAGTCTTCATTTTGTCCATTCCTCATACAGCCTTCAATGGCTATCTAAGgtacacatgcatatgcatgttaactaaatatttttcttagtactattagtgtttgttttgtaggagctttcaatataatatgcgccttatatgaaaaataaataattgtttgttggtgatttaattaaatag

upper sequence: Vv04s0023g02240.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACTGCAGGCTCTTCCCCAGCAAAAGTCTTCATTTTGTCCATTCTTCTTACAGTCTCCAATGGTTGTCTCAGgtgactctttgctt-----ttaattaaaaatactggtttatgatg----atttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcgtcag---------------------------------------------------
 |   |  | || ||||| || ||||||||  ||||| | ||||| |   |||||||||||||||||||||| ||||| || || |||||| | ||| ||||   | | |   |     ||  |||    || | || |  || |    | | || |  ||  |   |   ||  ||||    ||||| |   | |     | |                                                    
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttacttctattagtattagaagtgaaactcatcaa-aattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag