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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGTAACCGGAGTTCCAGGCTCTTTCTACGGCAGGCTCTTCCCCAGCAAAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtgactctttgcttttaattaaaaatactggtttatgatgatttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcatcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02230.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24800.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACGGCAGGCTCTTCCCCAGCAAAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtg---------------actctttgctttta-----attaaaaat---actggttta---tgatgatttattagtaaccaaaaagaaagcaagtga-gttagaaacttcaattgttcatcag--------------------------------
 |   |    || ||||| || |||||||| |||||| | ||||| |   ||||||| |||||||||||||| |||||||| || |||||| | ||| ||||                | |  || ||| ||     |||| || |   |||  |  |   |  |||||||        || | | |  |  | |    ||     | | ||   ||   ||                                 
CTACTTCTATGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacacatatatatatatattgcttacttctattagtattagaagtgaaactaatcaaaattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G24830.1 (Glycine max), 5'ss of exon 1
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACGGCAGGCTCTTCCCCAGCAAAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtgactctttgctt-----ttaattaaaaatactggtttatgatg----atttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcatcag---------------------------------------------------
 |   |  | || ||||| || |||||||| |||||| | ||||| |   ||||||| |||||||||||||| |||||||| || |||||| | ||| ||||   | | |   |     ||  |||    || | || |  || |    | | || |  ||  |   |   ||  ||||    ||||| |   | |     | |                                                    
CTACTTCTCTGGGGTTCCTGGTTCTTTCTATGGCAGGGTTTTCCCAAATCAAAGTCTTCATTTTGTCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtacatatatatatatatattgcttacttctattagtattagaagtgaaactcatcaa-aattagtgatttagggagtgtcagagaaagtgtcactagcatttatggccttaagaattatgcaaaatagctaactgcttgttggtgatttcattag

upper sequence: Vv04s0023g02230.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G06050.1 (Glycine max), 5'ss of exon 2
TTTTGTAACCGGAGTTCCAGGCTCTTTCTACGGCAGGCTCTTCCCCAGCAAAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtgact------ctttgcttttaattaaaaatactggtttatgatgatttattagtaaccaaaaagaaagcaagtgagttagaaacttcaattgttcatcag-
 |   |    || ||||| || || |||||  ||||| | ||||| |   |||||||  ||||||||||||| ||||||||||| |||||| | ||| |||||  |       | || |||| ||  |  ||     || |  ||  ||| |||||   | |     |      | | || |||  |     || |   ||  
CTACTTCTTTGGGGTTCCCGGTTCCTTCTATAGCAGGGTTTTCCCAAATCAAAGTCTGAATTTTGTCCATTCCTCTTATAGTCTTCAATGGCTTTCTAAGgtgcatgcatatatatgtttttgatacattatgtaaattaaatatt-tttcttagt--tccattgctatttgtatcaatttgaatttaatgatgatgcacact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110382498|gb|EC946794.1|EC946794
EST:     AAAGTCTTCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAG                         GTTCCTCGAGGGCTGGAGAACAAAGAGAATATTTACATGGCCAGTTCGAGC
genomic: AAAGTCTCCATTTTGTCCATTCTTCTTATAGTCTCCAATGGTTGTCTCAGgtgactcttt ... tgttcatcagGTTCCTCGAGGGCTGGAGAACAAAGGGAATATTTACATGGCCAGTTCGAGC