Sequence
atgc intronic sequence ATGC exonic sequenceCCCACCGGTCTAACAGCCAATCTTTTGAAACTCTTTGAGCCTCGTCCTCCATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGCCCACCATATACAGgtattggataccttcatgagttaggtcttacaattgttaggctcttctcagtatttttcttgctttggaagaaaaaaaaaaggagagaaattgcattgaattttgctcccaaaagcaagataaggggccccttaatacttatcaaacttcacctaaatgatacagtctaacaatatcttctttttctcctcaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G07200.2 (Glycine max), 5'ss of exon 2
CCCACCGGTCTAACAGCCAATCTTTTGAAACTCTTTGAGCCTCGTCCTCCATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGCCCACCATATACAGgtattggataccttcatgagttaggtctt-acaattgtta--ggctcttctcagtatttttcttgctttggaagaaaaaaaaaaggagagaaattgcattgaattttgctcccaaaagcaagataaggggccccttaatacttatcaaacttcacctaaatgatacagtctaacaatatcttctttttctcctcaag
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CCAACCGGTCTCACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAGCCACCTCCGGAGAAACGAAAATGCCCACCGTTATCAGgtttcgtaaatgattccg--ttaggttttcgcaattttcgttgattctactttgtgttttaattaatt-----------------gatatgcttttctttctcttttgaag--------------------------------------------------------------------------------------
upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G50670.1 (Arabidopsis thaliana), 5'ss of exon 2
CCCACCGGTCTAACAGCCAATCTTTTGAAACTCTTTGAGCCTCGTCCTCCATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGCCCACCATATACAGgtattggataccttcatgagttaggtcttacaattgttaggctcttctcagtatttttcttgctttggaagaaaaaaaaaaggagagaaattgcattgaattttgctcccaaaagcaagataaggggccccttaatacttatcaaacttcacctaaatgatacagtctaacaatatcttctttttctcctcaag
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CCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGgtatcaacttgtatatctgattatgttttctttgctttggatt----tgattttgtcttgtgtattgaatatag------------------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|56409078|gb|CX017330.1|CX017330EST: ATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGTCCACCATATACAG GAATGGCACAATTCGCAAGTAACTTTGCTGAACCGGGAGAGCCAGAATATT
genomic: ATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGCCCACCATATACAGgtattggata ... tctcctcaagGAATGGCACAATTCGCAAGTAACTTTGCTGAACCAGGAGAGCCAGAATATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCACCGGTCTAACAGCCAATCTTTTGAAACTCTTTGAGCCTCGTCCTCCATTGGAGTTTAAACCACCTCCAGAGAAAAGAAAATGCCCACCATATACAGgtattggataccttcatgagttaggtcttacaattgttaggctcttctcagtatttttcttgctttggaagaaaaaaaaaaggagagaaattgcattgaattttgctcccaaaagcaagataaggggccccttaatacttatcaaacttcacctaaatgatacagtctaacaatatcttctttttctcctcaag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA