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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAATGACGACCCTGGTGTTCGAGAGGATGCCATATCCGAGATCGTTAGGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactccttctatgtctacttcctgaaagatatagtctcaaaaaatgctagaaaggtgaaagattgtgaatgttgcattagggtcttctttctttt...

Basic information

species Vitis vinifera
transcript Vv04s0023g01520.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385013|gb|EC949492.1|EC949492
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110706348|gb|EE081794.1|EE081794
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|83274946|gb|DV939042.1|DV939042
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110687675|gb|EE065355.1|EE065355
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110384604|gb|EC949054.1|EC949054
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|34320785|gb|CF373539.1|CF373539
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|34362000|gb|CF403585.1|CF403585
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110383055|gb|EC947403.1|EC947403
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110374100|gb|EC938635.1|EC938635
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110731869|gb|EE106660.1|EE106660
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|71890516|gb|DT039571.1|DT039571
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110369800|gb|EC933969.1|EC933969
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110359986|gb|EC922427.1|EC922427
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
EST: gi|110708970|gb|EE084031.1|EE084031
EST:     GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACG                         GTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG
genomic: GGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactc ... tttttgtcagGTTTCACAAGAACTAGGTAAGAGTTTGAAGCAATCAACAAAAGACATGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACAAATGACGACCCTGGTGTTCGAGAGGATGCCATATCCGAGATCGTTAGGATGTCTGTGAGGAACATCGATCTCGATCCGCCTCTTATCCAATCAACGgttcgtactccttctatgtctacttcctgaaagatatagtctcaaaaaatgctagaaaggtgaaagattgtgaatgttgcattagggtcttctttctttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgaaa