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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTCGAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACTCGAAGATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtttcttccttcttgtacattctacatcttttcaagtatggttttttggggttttgggatcttgaaagctctttgctttggttatttgaag

Basic information

species Vitis vinifera
transcript Vv04s0023g01430.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G66730.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTGTTCGAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACTCGAAGATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtttcttccttcttgtacattctacatcttttcaagtatggttttttggggttttgggatcttgaaagctctttgctttggttat-ttgaag
| ||||| ||||| || || |||||||| |||||||||||||| |||||||||||||| || | |||||| || ||||||||||| ||| ||||||| ||||    |         || || || |     ||| ||   | || || | |||      ||  |||| ||   | ||  | | || |||| | ||| ||
AATGTTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCATTCGAAGATTTGTGGCACCAAGGAGTATAAATGCGATTGTGGAACTCTGTTTTCTAGgtggcga-----caaattgttataaa-----catattcaaaggtttgatctttc-----ttatggattttactaacttgtggattgggttttgttgcag

upper sequence: Vv04s0023g01430.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G50700.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTGTTCGAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCACTCGAAGATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtttcttccttcttgtacattctacatcttttcaagtatggttttttggggttttgggatcttgaaagctctttgctttggttatttgaag
| ||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||| || |  ||||| || || |||||||| ||| ||||||| ||||    ||| | | |||| ||  |  |  |||||      || |      ||      | |  |  | ||||  | | |||| ||             
AATGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATTTGTGGTACTAAAGAGTATAAATGTGATTGTGGTACTCTGTTTTCTAGgtaa--agtgtttgccttttttga--tcatacataagaaaaaattcaaaattcaacaatctaag--ttttgagtgatttttgtttgcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718371|gb|FC064777.1|FC064777
EST:     ATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAG                         GAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGA
genomic: ATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtt ... ttatttgaagGAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGA
EST: gi|161707829|gb|FC056462.1|FC056462
EST:     ATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAG                         GAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGA
genomic: ATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtt ... ttatttgaagGAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGA
EST: gi|37188168|gb|CF607517.1|CF607517
EST:     ATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAG                         GAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGA
genomic: ATTTGTGGAACAAGGGAGTACAAGTGCGATTGTGGGACTTTGTTTTCAAGgttcttagtt ... ttatttgaagGAGGGATAGCTTCATCACCCACAGGGCTTTCTGCGACGCGTTGGCGGAGGA