Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaagatttccatgttactactttctgtgtcgaggtgatgaccattggttattacactgtaaaaattgtgatcatttgaacaagtttctttcattt...

Basic information

species Vitis vinifera
transcript Vv04s0023g00600.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G47770.1 (Glycine max), 5'ss of exon 2
ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaagatttccatgttact--actttctgtgtcgaggtgatgaccattggttattacactgtaaaaattgtgatcatttgaacaagtttctttcattt-
 || ||| |||||||||||||||| ||| | |||||||||||| ||||||||||||||||||    |||  || ||  |  | ||| |   | |   |    |  | |    ||||    ||   ||   | ||  ||| ||    ||| |||  ||  
-TGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggacttttgatttttttgaaatttttagtttgcaattgcaaggactcac-attatttggtgttaaa-ataattgtttcaatttttttttttacttca

upper sequence: Vv04s0023g00600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G38550.1 (Glycine max), 5'ss of exon 2
ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaagatttc-catgttactactttctgtgtcgaggtg-atgaccattggttattacactgtaaaaattgtgatcatttgaacaagtttctttcattt-----
||| ||| |||||||||||||||| ||| | |||||||||||| | ||||||||||||||||    ||   ||| ||   | |||  || |  |  || | |  |     || || |    |||||    | ||  |||   ||| ||| | | | ||     
ATGCATTTTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCAAAATACAATTgtaagtggacttctgcattttgaaatttttagtttgcaattgcaaggactcacattgtttcgtgttaaaa----taattgttt---caaatttttgttaattctata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71878369|gb|DT027424.1|DT027424
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71856011|gb|DT005066.1|DT005066
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110361442|gb|EC924912.1|EC924912
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110405116|gb|EC970650.1|EC970650
EST:     TCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110724888|gb|EE101111.1|EE101111
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71857088|gb|DT006143.1|DT006143
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|349811100|gb|FQ406088.1|FQ406088
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATCTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|349827772|gb|FQ422640.1|FQ422640
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351018393|gb|FQ439205.1|FQ439205
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161708900|gb|FC059646.1|FC059646
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110691547|gb|EE069777.1|EE069777
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110381312|gb|EC946638.1|EC946638
EST:     GATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: GATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71858445|gb|DT007500.1|DT007500
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161714509|gb|FC062959.1|FC062959
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71858250|gb|DT007305.1|DT007305
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351030753|gb|FQ438591.1|FQ438591
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351016449|gb|FQ423876.1|FQ423876
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351014219|gb|FQ434808.1|FQ434808
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110390835|gb|EC955766.1|EC955766
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|349816150|gb|FQ403646.1|FQ403646
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|349821590|gb|FQ408149.1|FQ408149
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110383561|gb|EC947940.1|EC947940
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|27755317|gb|CB036072.1|CB036072
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110721162|gb|EE097848.1|EE097848
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110377835|gb|EC942928.1|EC942928
EST:     GGTGGATGAGAATGATCGTATTGTTGGTCATGATCCCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: GGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110381620|gb|EC934948.1|EC934948
EST:     AGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: AGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110730975|gb|EE108667.1|EE108667
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161714485|gb|FC064460.1|FC064460
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|349833009|gb|FQ416387.1|FQ416387
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110384862|gb|EC949328.1|EC949328
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351031443|gb|FQ446646.1|FQ446646
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110390904|gb|EC955847.1|EC955847
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110409935|gb|EC975610.1|EC975610
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351017045|gb|FQ424472.1|FQ424472
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|352794136|gb|FQ479378.1|FQ479378
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71859775|gb|DT008830.1|DT008830
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110687512|gb|EE065008.1|EE065008
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71863235|gb|DT012290.1|DT012290
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161711292|gb|FC060367.1|FC060367
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|30303272|gb|CB980066.1|CB980066
EST:     GGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: GGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110689856|gb|EE066444.1|EE066444
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|26264645|gb|CA815708.1|CA815708
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|37190678|gb|CF610027.1|CF610027
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351049295|gb|FQ429038.1|FQ429038
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110730593|gb|EE107853.1|EE107853
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110384180|gb|EC948599.1|EC948599
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161717400|gb|FC068871.1|FC068871
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGCTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161713558|gb|FC064081.1|FC064081
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|349825950|gb|FQ415755.1|FQ415755
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATACAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|161720991|gb|FC070700.1|FC070700
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|77580614|gb|DV219211.1|DV219211
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71864567|gb|DT013622.1|DT013622
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|30305248|gb|CB982042.1|CB982042
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351024079|gb|FQ423502.1|FQ423502
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110726293|gb|EE101950.1|EE101950
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|71873106|gb|DT022161.1|DT022161
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|110409938|gb|EC975613.1|EC975613
EST:     ATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: ATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|30321480|gb|CD004742.1|CD004742
EST:     TCTGGTGGATGATAATGATCGGATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
EST: gi|351029622|gb|FQ427462.1|FQ427462
EST:     TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATT                         GTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA
genomic: TCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaaga ... tcatttgcagGTCATTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCACAGAGCTTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTATTCTGGTGGATGAGAATGATCGTATTGTTGGTCATGATACCAAATACAATTgtaagtaagatttccatgttactactttctgtgtcgaggtgatgaccattggttattacactgtaaaaattgtgatcatttgaacaagtttctttcattt

- - - - TGGTGG
- - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaag