Sequence
atgc intronic sequence ATGC exonic sequenceCGAGCGTCCGGGAGAACCAGACTGTTCTTACTACATCAGGACAGGATTATGTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGgtaaaaaaatggatgaatttatgacctcagaattaatagtatgcaagaaatgtctgtaggtgatgaactacattcttagttatctgaatcttttggactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G38650.1 (Glycine max), 5'ss of exon 2
CGAGCGTCCGGGAGAACCAGACTGTTCTTACTACATCAGGACAGGATTATGTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGgtaaaaaaatgg-atgaatttatgac--ctcagaatta--atagtatgcaagaaatgtctgtaggtgatgaactacattcttagttatctgaatcttttggactt
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TGAGCATCCAGGAGAACCAGATTGTTCATACTACATTAGGACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGgtatgatccttgcattgcttttggacaatttgtaattataattttgttttatatgtattagatattgttgatacataattcttgttttttatattaattt-----
upper sequence: Vv04s0023g00370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G47660.1 (Glycine max), 5'ss of exon 2
CGAGCGTCCGGGAGAACCAGACTGTTCTTACTACATCAGGACAGGATTATGTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGgtaaaaaaatggatgaatttatgacctcagaattaatagtatgcaagaaatgtctgtaggtgatgaactacattcttagttatctgaatcttttggactt--
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-GAGCATCCAGGAGAACCAGATTGTTCATACTACATTAGGACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGtatgatccttcaattgcttttggacaaattgt-aattataaatttgttatatatgtattagatattgttggtacataaattttggtttttttttatattaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384276|gb|EC948703.1|EC948703EST: GTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTG GCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAG
genomic: GTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGgtaaaaaaat ... gataatctagGCTATTGCCACTGCAAGGATGAAAGGAGAGTTCCCGGAGAGAATGGGACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGAGCGTCCGGGAGAACCAGACTGTTCTTACTACATCAGGACAGGATTATGTAGATTTGGGATAACTTGCCGGTTTAATCATCCTCCCAATAGAAAACTGgtaaaaaaatggatgaatttatgacctcagaattaatagtatgcaagaaatgtctgtaggtgatgaactacattcttagttatctgaatcttttggactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa