1 5' 3' | 2 5' 3' | 3 5' 3' |
TTACACTGATGGTCGCTGGTATAATGGTGTCATTTTAGGGTTGGAAGGTTTGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaatgctcagatatacttgtttgtcctgtgtcacagttattttccctcttaaactgatcttttattttattttatcaagttatttgaatttat...
species | Vitis vinifera |
transcript | Vv04s0008g07000.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTG ATATGCAAGTTCTTTCTAEST: gi|110712504|gb|EE090201.1|EE090201
genomic: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaa ... cctagtgcagATATGCAAGTTCTTTCTA
EST: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTG ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCEST: gi|110718718|gb|EE095871.1|EE095871
genomic: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaa ... cctagtgcagATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGC
EST: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTG ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCEST: gi|37190291|gb|CF609640.1|CF609640
genomic: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaa ... cctagtgcagATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGC
EST: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTG ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACEST: gi|110702309|gb|EE080873.1|EE080873
genomic: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaa ... cctagtgcagATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCAC
EST: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAAAATGTTG ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGC
genomic: TGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaa ... cctagtgcagATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACACTGATGGTCGCTGGTATAATGGTGTCATTTTAGGGTTGGAAGGTTTGGACTCTGCAAAGATTTCTTTCCTTTCACCCACATCTGAAAATATGTTGgtacgtgcaatgctcagatatacttgtttgtcctgtgtcacagttattttccctcttaaactgatcttttattttattttatcaagttatttgaatttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc