1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGTGTGCTCAGCATGGCCAGACTCTTTGGAGATTCAGAAAGTGTTCATCTATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAAgtatgattttttcctcttctctgacactttggttgctttcccagaataccttgtcatgatttctatttcataatgcaatttttgaactcattttagtttg...
species | Vitis vinifera |
transcript | Vv04s0008g05940.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAA GAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAGEST: gi|349813985|gb|FQ414219.1|FQ414219
genomic: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAAgtatgatttt ... taattttcagGAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAG
EST: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAA GAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAGEST: gi|349825469|gb|FQ419386.1|FQ419386
genomic: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAAgtatgatttt ... taattttcagGAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAG
EST: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAA GAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAGEST: gi|349821906|gb|FQ413077.1|FQ413077
genomic: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAAgtatgatttt ... taattttcagGAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAG
EST: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAA GAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCCTGGAGGAAAG
genomic: TATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAAgtatgatttt ... taattttcagGAGTCTGGATTATAAGCTTCAGAATGCACTTTGTGAGTTCTTGGAGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGTGCTCAGCATGGCCAGACTCTTTGGAGATTCAGAAAGTGTTCATCTATCGACATGGACGGTTGCTTCCTAGGCCTTGGTTGGGACCTGGTTTTAAgtatgattttttcctcttctctgacactttggttgctttcccagaataccttgtcatgatttctatttcataatgcaatttttgaactcattttagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc