Sequence
atgc intronic sequence ATGC exonic sequenceTTCTATTGGTGATCTTCAACAAAGCAGCCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgtagattcctggccatcttttttcttttcttggcaatcaattgccttatataatcaaggtgtttgattttttcactcctcatgcaactttaattgaaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g40030.2 (Oryza sativa), 5'ss of exon 2
TTCTATTGGTGATCTTCAACAAAGCAGCCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgtagattcctggccatcttttttcttttcttggcaatcaa---ttgcc-ttatataatcaaggtgtttgattttttcactcctcatgca-actttaattgaaaat
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TGTTGCTAGTGATGTTTAACAAAGCAGCACTGTCTTCATATAATTTCCCCTGTGCAAATGTCATTACGCTCCTTCAGgtacttctcatgtccccttggatggactctggaaagtctggctttgctgttatgttgtgcaagtgtgc-attacacatttacacatgaataacttgcttgt----
upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G133226_T04 (Zea mays), 5'ss of exon 2
TTCTATTGGTGATCTTCAACAAAGCAGCCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgta---gat---tcctggccatcttttttcttttcttggcaatcaattgccttatataatcaaggtgtttgattttttcactcctcatgcaactttaattgaaaat
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TGTTGCTAGTGATGTTTAACAAAGCAGCTCTCTCTTCGTATAATTTCCCTTGTGCGAATGTCATCACACTCCTTCAGgtactggatgtgttctgggaaaatctatggcgtgcatgc---ttcatgcacttttctggatggagtatctgaaagtttcatgtct-gtgttccatgatttttta--
upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G020976_T01 (Zea mays), 5'ss of exon 2
TTCTATTGGTGATCTTCAACAAAGCAGCCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgta---gat---tcctggccatcttttttcttttcttggcaatcaattgccttatataatcaaggtgtttgattttttcactcctcatgcaactttaattgaaaat
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TGCTGCTAGTGATGTTTAACAAAGCAGCTCTTTCTTCATACAAATTCCCTTGCGCAAATGTCATCACGCTCCTTCAGgtactggatgtgttctggcaaaatcgacatgcttcatgcacatttctggatgcagtgcgtgaaagg--ttcatgtctgtgttcc--atcgatttcttagcaaac--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352768139|gb|FQ467278.1|FQ467278EST: CCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAG ATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATT
genomic: CCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgtagattcct ... tctgctgcagATAATATGTTCATGTTCTTTTCTCTATGCATTGAGACGCTGGAAGATTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTATTGGTGATCTTCAACAAAGCAGCCCTTTCTTCTTATCATTTCCCTTGTGCAAGTGTCATCACACTCTTTCAGgtagattcctggccatcttttttcttttcttggcaatcaattgccttatataatcaaggtgtttgattttttcactcctcatgcaactttaattgaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa