1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGCATGTGGGATGACAATGGAATCATTAACGCTTCTACTGCAGAAGTTGGAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGgtaggactagttccagtttacctgattgcttcatcaaattaactataatgtaatttggagcccaactctttgtgcattttatgtatag
species | Vitis vinifera |
transcript | Vv04s0008g05480.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAG GATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAAEST: gi|37188322|gb|CF607671.1|CF607671
genomic: GAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGgtaggactag ... ttatgtatagGATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAA
EST: GAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAG GATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAAEST: gi|110713754|gb|EE089952.1|EE089952
genomic: GAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGgtaggactag ... ttatgtatagGATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAA
EST: GAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAG GATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAA
genomic: GAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGgtaggactag ... ttatgtatagGATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCATGTGGGATGACAATGGAATCATTAACGCTTCTACTGCAGAAGTTGGAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGgtaggactagttccagtttacctgattgcttcatcaaattaactataatgtaatttggagcccaactctttgtgcattttatgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA